Hello Valeria,

The setting for tool_dependency_dir must be an actual path on your local file 
system, something like:

tool_dependency_dir = ../tool_dependencies

Make sure that you set the location to a place that is safe for installing 
files.

Greg Von Kuster

On Dec 4, 2013, at 3:09 PM, Valeria Parreira Pinto <vparr...@uoguelph.ca> wrote:

> Hi 
> 
> I am having problems to install a tool from tool shed named S_MART (attached 
> paper) on my local Galaxy.
> The reason to install S_MART is to use DETR'PROK (attached paper) in Galaxy.
> The first time, I got a warning  before installing S-MART saying:
> " set the value of your tool_dependency_dir setting in universe_wsgi_ini and 
> restart before installing"
> 
> In the universe_wsgi_ini:
> 
> Path to the directory in which managed tool dependencies are placed.  To use
> # the dependency system, see the documentation at:
> # http://wiki.g2.bx.psu.edu/Admin/Config/Tool%20Dependencies
> #tool_dependency_dir = None 
> tool_dependency_dir = tool_dependency_dir  
> 
> I have follow the instructions of the Matthias Zytnicki (paper's author). I 
> did not work, still with error, however now it does not mention where or what 
> to do!!
> 
> Could you please let me know what would be the problem? and How to fix it?
> Thanks in advance,
> Valeria
> 
> 
> _____________________________________________
> Valeria Parreira, Ph.D
> Adjunct Faculty
> Department of Pathobiology
> OVC, University of Guelph,
> Guelph, Ontario, N1G 2W1, Canada
> Tel: +1 (519) 824-4120 - Ext. 54717(lab) and 54679 (office)
> vparr...@uoguelph.ca
> 
> <DETR_PROK.pdf><SMART.pdf>___________________________________________________________
> Please keep all replies on the list by using "reply all"
> in your mail client.  To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
>  http://lists.bx.psu.edu/
> 
> To search Galaxy mailing lists use the unified search at:
>  http://galaxyproject.org/search/mailinglists/

___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/

Reply via email to