Hi everybody,
Our Galaxy users from my lab can upload directories of files ( 
"user_library_import_dir" in the universe_wsgi.ini). They can upload their 
files by symlink, but  it doesn't work with directories which are symlinks ( in 
the interface, these directories are not shown).
Is there a way to force Galaxy to "see" directories which are symlinks ( in the 
"user_library_import_dir" directory)?

Thanks in advance to all,
Mish







> Date: Thu, 28 Nov 2013 15:06:47 -0600
> Subject: Re: [galaxy-dev] Galaxy code: data libraries
> From: chil...@msi.umn.edu
> To: mish...@hotmail.com
> CC: galaxy-dev@lists.bx.psu.edu
> 
> I think the relevant piece of code is in
> templates/webapps/galaxy/ibrary/common/common.mako.
> 
> The lines
>                                 <select name="link_data_only">
>                                     %if not link_data_only or
> link_data_only == 'copy_files':
>                                         <option value="copy_files"
> selected>Copy files into Galaxy
>                                         <option
> value="link_to_files">Link to files without copying into Galaxy
>                                     %else:
>                                         <option
> value="copy_files">Copy files into Galaxy
>                                         <option value="link_to_files"
> selected>Link to files without copying into Galaxy
>                                     %endif
>                                 </select>
> 
> could probably be modified a few different ways. I have not really
> tried this but if you really do want to eliminate copying all together
> you can probably just replace it with:
> 
>                                 <select name="link_data_only">
>                                       <option value="link_to_files"
> selected>Link to files without copying into Galaxy
>                                 </select>
> 
> Alternatively, you could probably modify the default to be linking by
> replacing this with:
> 
>                                 <select name="link_data_only">
>                                     %if link_data_only and
> link_data_only == 'copy_files':
>                                         <option
> value="link_to_files">Link to files without copying into Galaxy
>                                         <option value="copy_files"
> selected>Copy files into Galaxy
>                                     %else:
>                                         <option value="link_to_files"
> selected>Link to files without copying into Galaxy
>                                         <option
> value="copy_files">Copy files into Galaxy
>                                     %endif
>                                </select>
> 
> Hope this helps!
> 
> -John
> 
> 
> 
> On Thu, Nov 28, 2013 at 6:56 AM, Misharl mon <mish...@hotmail.com> wrote:
> > Hi eveybody,
> >
> > Is there a way in the code of Galaxy, to force the users to use "link to
> > files without copying in Galaxy" by hiding the "copy files into Galaxy"
> > option in the interface, when they add datasets in their library? We want to
> > avoid users to click on "copy files into Galaxy" by mistake.
> >
> >
> > Thanks in advance to all
> >
> > Mish
> >
> >
> >
> >
> >
> >
> >
> > Hi everybody,
> >
> >
> > In my lab, after upgrading our Galaxy instance to the latest version, we
> > have a problem with displaying tabular files.
> >
> > Any idea from where the problem can come?
> >
> > Thanks in advance to all.
> >
> > Mish
> >
> > ___________________________________________________________
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