On Tue, Dec 10, 2013 at 2:46 PM, Greg Von Kuster <g...@bx.psu.edu> wrote:
> Hello Peter,
> There are several "flags" for each repository revision that determine if and 
> how
> the revision is tested.  If tested, flags also detemine which category the 
> latest
> revision falls into when clicking on the links in the Tool Shed's menu.  One 
> of
> these flags is "tools_functionally_correct", which was incorrectly set on
> http://testtoolshed.g2.bx.psu.edu/view/peterjc/tmhmm_and_signalp/ee10017fcd80
> due to a bug introduced during the reengineering of the Topll Shed's install
> and test framework that I recently did.  This bug was corrected in the 
> following
> change set.
> https://bitbucket.org/galaxy/galaxy-central/commits/ca25579a90e97157e32b527e7471cde90e9beed0
> I've corrected the setting for the tools_functionally_correct flag for your
> repository so it should no longer be displayed in the "Latest revision: 
> failing
> tool tests" category.
> Thanks for letting us know about this, and please let us know if you discover
> other reposiory revisions that require the same correction.
> Greg Von Kuster

Thanks Greg,

I'm seeing this tool listed under "Latest revision: failing tool tests",
while it has been marked to skipped (missing R dependency,
which I ought to be able to handle now with Bjoern's work):


Interestingly the error suggests rpy is missing on the Test Tool Shed,
which if true ought to break a lot of the core tools as well...

ImportError: No module named rpy


Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:

To search Galaxy mailing lists use the unified search at:

Reply via email to