Thanks Greg for the heads-up!
These are great news, I can surely wait until mid-January (the wait
will be mostly vacation time :).
Just let us know when we can start checking again the test results on
the main Tool Shed.
Nicola
Il 2013-12-17 21:15 Greg Von Kuster ha scritto:
Hi Nicola,
There's some bad news and good new regarding this issue.
The bad news is that the old version of the tool shed's install and
test framework required complete reengineering, and this resulted in
it not being functional in the main tool shed's environment which
runs
the Galaxy stable branch. I've tried several approaches to committing
and grafting changes to the stable branch in an attempt to piece
together a functional environment for the main tool shed until the
next Galaxy release, but the reengineering effort was so extensive
that it made this extremely difficult.
So the main tool shed cannot be tested until the next-stable branch
is created in preparation for the next Galaxy release. The
next-stable branch is currently scheduled for mid January, 2014, with
the Galaxy release currently scheduled for the first week of
February,
2014.
The good news is that the reengineerig effort has resulted in a much
more stable and functional install and test framework that will
provide many more benefits than its previous incarnation. I am now
working on enhancing the framework to include installing and testing
repositories of type tool_dependency_definition. This enhancement
will be included in the next-stable branch when it is created in
mid-January.
Sorry for the inconvenience this may cause, but after mid-January
things should be in good shape on the main tool shed.
Greg Von Kuster
On Dec 12, 2013, at 5:00 PM, Nicola Soranzo <sora...@crs4.it> wrote:
Hi Greg,
thanks for looking at this!
Unfortunately still no test results displayed for
http://toolshed.g2.bx.psu.edu/view/crs4/blat
Best,
Nicola
Il giorno mar, 10/12/2013 alle 10.43 -0500, Greg Von Kuster ha
scritto:
Hello Nicola,
The main tool shed is running a bit behind the test tool shed since
it
is on the stable branch. I've commited a fix for the main tool shed
in
11664:3bf805dfa14e that should correct the problem resulting in no
test results being displayed. Results should begin being displayed
with the test run tomorrow morning. I'll make sure to inspect the
test
runs for the main tool shed more closely from here on (I've been
focusing more on the test tool shed) to make sure the different
issues
that arise on the stable branch are handled more quickly.
Thanks for letting me know about this.
Greg Von Kuster
On Dec 10, 2013, at 10:09 AM, Nicola Soranzo <sora...@crs4.it>
wrote:
Hi Greg!
I don't know if it's the same problem, but I've not been able to
see
test results for this repository for a while:
http://toolshed.g2.bx.psu.edu/view/crs4/blat
Best,
Nicola
Il giorno mar, 10/12/2013 alle 09.46 -0500, Greg Von Kuster ha
scritto:
There are several "flags" for each repository revision that
determine if and how the revision is tested. If tested, flags also
detemine which category the latest revision falls into when
clicking on the links in the Tool Shed's menu. One of these flags
is "tools_functionally_correct", which was incorrectly set on
http://testtoolshed.g2.bx.psu.edu/view/peterjc/tmhmm_and_signalp/ee10017fcd80
due to a bug introduced during the reengineering of the Topll
Shed's install and test framework that I recently did. This bug
was corrected in the following change set.
https://bitbucket.org/galaxy/galaxy-central/commits/ca25579a90e97157e32b527e7471cde90e9beed0
I've corrected the setting for the tools_functionally_correct
flag for your repository so it should no longer be displayed in the
"Latest revision: failing tool tests" category.
Thanks for letting us know about this, and please let us know if
you discover other reposiory revisions that require the same
correction.
Greg Von Kuster
On Dec 9, 2013, at 5:06 AM, Peter Cock
<p.j.a.c...@googlemail.com> wrote:
Hi Dave & Greg,
Could you double check how the "Skip automated testing of tools
in
this revision" setting is being used on the Test Tool Shed?
e.g.
http://testtoolshed.g2.bx.psu.edu/view/peterjc/tmhmm_and_signalp/ee10017fcd80
Test runs
Automated test environment
Not tested
Licensing issues restrict automated tool dependency
installation.
2013-11-29 17:19:34
Automated test environment
Not tested
Licensing issues restrict automated tool dependency
installation.
(Ticked) Skip automated testing of tools in this revision
That all looks fine, and it is listed under "Latest revision:
skip tool tests".
However, this tool is also listed under "Latest revision:
failing tool tests".
Regards,
Peter
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___________________________________________________________
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and other Galaxy lists, please use the interface at:
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___________________________________________________________
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in your mail client. To manage your subscriptions to this
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