On Thu, Nov 28, 2013 at 5:13 PM, Peter Cock <p.j.a.c...@googlemail.com> wrote: > Hello all, > > FAO: Administrators of local Galaxy instances using the NCBI BLAST+ wrappers. > > Over on the galaxy_blast repository I have been updating the > NCBI BLAST+ wrappers (including unit tests) to work with the > current release, NCBI BLAST+ 2.2.28 (aka BLAST 2.2.28+): > https://github.com/peterjc/galaxy_blast > > The initial set of changes is now on the Test Tool Shed, > http://testtoolshed.g2.bx.psu.edu/view/peterjc/ncbi_blast_plus > > This includes a workaround for a known regression in the > makeblastdb tool dealing with duplicated identifiers: > https://github.com/peterjc/galaxy_blast/commit/349e31c6cec4429c5523fde5975e28e399e0dfb1
For the record, this wasn't actually a regression, rather an old "bug" or corner case I'd not noticed before - BLAST+ lets you create databases with duplicate identifiers, which can give very confusing output: http://blastedbio.blogspot.co.uk/2013/12/blast-should-keep-its-blordid.html > In terms of end-user features, the big improvement in the > BLAST+ 2.2.28 release was the ability to get the BLAST > match descriptions in the tabular output, and other fields: > http://blastedbio.blogspot.co.uk/2012/05/blast-tabular-missing-descriptions.html > > ... This update is already on the main Galaxy Tool Shed, and we've been running it locally without any problems. Regards, Peter ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
