Just to clarify do you want to access them from Galaxy web server code
or from a Galaxy tool wrapper written in Python?
Nearly every part of the Galaxy source code has access to app and
everything inside of it, for instance all controller methods take in a
trans variable that contains a reference to app (trans.app).
I suspect you want to access it from a tool wrapper though? This is
not possible. If this is the case - what are you hoping to accomplish?
Do you want to access to the all_fasta data table information in the
On Fri, Jan 10, 2014 at 6:56 PM, Dooley, Damion <damion.doo...@bccdc.ca> wrote:
> I've seen
> $__app__.tool_data_tables[ 'all_fasta' ].get_fields() )[-1]
> in tool xml templates. Is there a way I can access the tool_data_tables
> structure from python code too?
> I see all the initialization stuff happening in
> But not seeing where one can access any of these app variables?
> Please keep all replies on the list by using "reply all"
> in your mail client. To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
> To search Galaxy mailing lists use the unified search at:
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
To search Galaxy mailing lists use the unified search at: