Hi all,

I could use a little basic help.  I'm setting up a proof of concept galaxy 
server that will run in conjunction with our HPC here at FSU.  Ultimately this 
will serve as a template where we will allow some users to run galaxy on a VM 
and use it as a mechanism for submitting/managing jobs on our cluster.

I've installed Galaxy on a VM that mounts our HPC file system and managed to 
import an ecoli .fa file.

My plan was to run bowtie2 on our HPC.  

Disclaimer... I'm a sysadmin and other than compiling software my knowledge in 
bioinformatics is sorely lacking ;)

I'm looking at the docs here  
I get a 404 for details on Torque - 

Any help would be greatly appreciated.  Additionally, if my intended use for 
Galaxy seems out of the scope of what would be useful, please let me know.

Donny Shrum
FSU Research Computing Center

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