Dear all,
I developed a tool which allows an optional selection as input amongst
others. It works quite neat if I run it via "Analyse Data".
Actually, it only breaks in one condition:
If I try to run it "as a Workflow" and set the "multiple selection
input" to be set at runtime AND do not select anything at runtime it'll
raise a Cheetah error.
Even if I select nothing but prior to runtime as workflow it works fine
again.
The multiple selection is based on a data table/ loc-file.
Any ideas?
Cheers,
Christan
relevant tool specification snippet:
---------------------------------------------
[...]
<param [...] type="select" optional="true" multiple="true"
display="checkboxes" [...]>
<options from_data_table="fmi_[...]"/>
</param>
[...]
Cheetah error:
--------------------
Traceback (most recent call last):
File "[...]/galaxy/galaxy_dist/lib/galaxy/jobs/runners/__init__.py",
line 123, in prepare_job
job_wrapper.prepare()
File "[...]/galaxy/galaxy_dist/lib/galaxy/jobs/__init__.py", line
702, in prepare
self.command_line = self.tool.build_command_line( param_dict )
File "[...]/galaxy/galaxy_dist/lib/galaxy/tools/__init__.py", line
2639, in build_command_line
command_line = fill_template( self.command, context=param_dict )
File "[...]/galaxy/galaxy_dist/lib/galaxy/util/template.py", line 9,
in fill_template
return str( Template( source=template_text, searchList=[context] ) )
File
"[...]/galaxy/galaxy_dist/eggs/Cheetah-2.2.2-py2.6-linux-x86_64-ucs4.egg/Cheetah/Template.py",
line 1004, in __str__
return getattr(self, mainMethName)()
File
"cheetah_DynamicallyCompiledCheetahTemplate_1391423600_85_54475.py",
line 89, in respond
File
"cheetah_DynamicallyCompiledCheetahTemplate_1391423600_85_54475.py",
line 89, in <lambda>
IndexError: list index out of range
Galaxy:
----------
changeset: 11219:5c789ab4144a
branch: stable
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