I am trying to set up Galaxy to interface with a Cray system which runs
After reading this Galaxy wiki page:
I was able to scramble torque egg with the following command:
scripts/scramble.py -e pbs_python
I do not fully understand the "parameters and configuration" part in PBS
section of the wiki page. Where exactly the "runner" XML snippet with
<plugin> and <destinations> should be placed?
Also wondering if the snippet will be required for all tools that I want to
run on compute nodes or is it a global setting? Can I tell existing tools
to use this setup?
Another question is, can I configure Galaxy to submit jobs to compute
cluster as a mortal user and not an admin of the system?
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