I am trying to set up Galaxy to interface with a Cray system which runs

After reading this Galaxy wiki page:

I was able to scramble torque egg with the following command:

LIBTORQUE_DIR=/opt/torque/2.4.11/lib/libtorque.so.2 python
scripts/scramble.py -e pbs_python

I do not fully understand the "parameters and configuration" part in PBS
section of the wiki page. Where exactly the "runner" XML snippet with
<plugin> and <destinations> should be placed?

Also wondering if the snippet will be required for all tools that I want to
run on compute nodes or is it a global setting? Can I tell existing tools
to use this setup?

Another question is, can I configure Galaxy to submit jobs to compute
cluster as a mortal user and not an admin of the system?

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