On Tue, Feb 18, 2014 at 2:20 PM, Federico Zambelli
<federico.zambe...@unimi.it> wrote:
> Hi,
> something strange happens with Cufflinks in our Galaxy server. When a user
> deletes a running Cufflinks job in fact the associated Cufflinks process(es)
> are not terminated. Apart from unneccessary CPU usage, this prevents other
> jobs from starting if the max jobs limit has been already reached by the
> user.
> This happens only with Cufflinks, Cuffcompare for comparison behaves just
> fine.
> Best,
> F.

What cluster system are you using? Can you try a few other long
running tools for comparison?

I've been meaning to double check if this still happens, but I had seen
this for BLAST+ jobs under SGE (noticeable again when large zombie
jobs are blocking the queue).

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