On Wednesday, February 19, 2014, Peter Cock <p.j.a.c...@googlemail.com> wrote:
> On Wed, Feb 19, 2014 at 2:16 PM, John Chilton > <jmchil...@bx.psu.edu<javascript:;>> > wrote: > > Hey Peter, > > > > Have you seen this solution? > > > > > https://wiki.galaxyproject.org/Admin/Tools/Multiple%20Output%20Files#Number_of_Output_datasets_cannot_be_determined_until_tool_run > > > > It always seems to get mentioned when this topic is brought up. It has > > serious limitations in terms or workflow running, but it can probably > > be made to work for individual tool executions. > > Hmm. Any real life examples of this in use? I guess looking for > the magic string $__new_file_path__ in the <command> tag > is the only way to identify this? > > Hi Peter, I used the current functionality here: http://toolshed.g2.bx.psu.edu/view/cjav/split_by_barcode The code for the underlining tool is available here: https://github.com/cjav/ngs-tools Hope it helps, Carlos
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