On Tue, Feb 25, 2014 at 10:57 PM, Sanka, Ravi <rsa...@jcvi.org> wrote: > Greetings, > > We are trying to enable job-splitting and merging on our Galaxy blast tools. > We set the following parameters in the universe_wsgi.ini: > > use_tasked_jobs = True > local_task_queue_workers = 2 > > Then we executed the tool "NCBI BLAST+ blastn" (from devteam's NCBI BLAST+) > on a query set of 10,000 sequences. The tool's xml has the following > parallelism tag: > > And as expected, the job was split into 10 tasks (IDs 0-9), each one with > 1000 sequences. Four tasks started running simultaneously. > > Those four tasks have completed, but now there is no indication that the > other 6 tasks have begun running, and the job on the GUI is still in the > yellow-state in History. > > It has been nearly an hour, and still no sign of those tasks or any job > running. What could be the cause of this? >
Is this connected to a cluster (e.g. SGE), or all on one machine? We run this with a cluster, so you can use the cluster tools to monitor the sub-tasks Galaxy created. Peter RE: https://github.com/peterjc/galaxy_blast/issues/35 and http://toolshed.g2.bx.psu.edu/view/devteam/ncbi_blast_plus/ ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
