On Tue, Feb 25, 2014 at 10:57 PM, Sanka, Ravi <rsa...@jcvi.org> wrote:
> Greetings,
> We are trying to enable job-splitting and merging on our Galaxy blast tools.
> We set the following parameters in the universe_wsgi.ini:
> use_tasked_jobs = True
> local_task_queue_workers = 2
> Then we executed the tool "NCBI BLAST+ blastn" (from devteam's NCBI BLAST+)
> on a query set of 10,000 sequences. The tool's xml has the following
> parallelism tag:
> And as expected, the job was split into 10 tasks (IDs 0-9), each one with
> 1000 sequences. Four tasks started running simultaneously.
> Those four tasks have completed, but now there is no indication that the
> other 6 tasks have begun running, and the job on the GUI is still in the
> yellow-state in History.
> It has been nearly an hour, and still no sign of those tasks or any job
> running. What could be the cause of this?

Is this connected to a cluster (e.g. SGE), or all on one machine?

We run this with a cluster, so you can use the cluster tools to
monitor the sub-tasks Galaxy created.


RE: https://github.com/peterjc/galaxy_blast/issues/35 and
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