Hi Guys,

Our galaxy instance has been in use for a couple years but since Feb 2014
it started to show us some weird behavior. Recently the upload function
suddenly stopped working properly. We are getting messages like the
following. I'm not sure if this only happens to us. If someone has seen
this before, please give me some hints.

P.S., I searched online and many says that this is because the browser does
not wait till all the data from the server is received and closes the
socket. However it happens both in firefox and chrome. I'm wondering if it
is because galaxy has any change recently but when I do 'hg update stable'
it reported that it is up to date.

Thanks!
Rui

Error messages:

Exception happened during processing of request from
('127.0.0.1'----------------------------------------

Exception happened during processing of request from (, 52259'127.0.0.1',
52260)

Traceback (most recent call last):

)

Traceback (most recent call last):

  File
"/home/bioinfoadmin/app/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/httpserver.py",
line 1068, in process_request_in_thread

----------------------------------------

Exception happened during processing of request from
(----------------------------------------

  File
"/home/bioinfoadmin/app/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/httpserver.py",
line 1068, in process_request_in_thread

Exception happened during processing of request from'127.0.0.1' ,
('127.0.0.1'52264, 52262----------------------------------------

)

Exception happened during processing of request from
('127.0.0.1'----------------------------------------

, )

Traceback (most recent call last):

Traceback (most recent call last):

  File
"/home/bioinfoadmin/app/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/httpserver.py",
line 1068, in process_request_in_thread

  File
"/home/bioinfoadmin/app/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/httpserver.py",
line 1068, in process_request_in_thread

Exception happened during processing of request from 52261('127.0.0.1',
----------------------------------------

)Exception happened during processing of request from

Traceback (most recent call last):

52263('127.0.0.1')

  File
"/home/bioinfoadmin/app/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/httpserver.py",
line 1068, in process_request_in_thread

Traceback (most recent call last):

, 52265)

  File
"/home/bioinfoadmin/app/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/httpserver.py",
line 1068, in process_request_in_thread

Traceback (most recent call last):

  File
"/home/bioinfoadmin/app/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/httpserver.py",
line 1068, in process_request_in_thread

    self.finish_request(request, client_address)

  File "/usr/lib/python2.7/SocketServer.py", line 323, in finish_request

    self.finish_request(request, client_address)

  File "/usr/lib/python2.7/SocketServer.py", line 323, in finish_request

    self.finish_request(request, client_address)

    self.finish_request(request, client_address)

    self.finish_request(request, client_address)

  File "/usr/lib/python2.7/SocketServer.py", line 323, in finish_request

    self.finish_request(request, client_address)

  File "/usr/lib/python2.7/SocketServer.py", line 323, in finish_request

  File "/usr/lib/python2.7/SocketServer.py", line 323, in finish_request

  File "/usr/lib/python2.7/SocketServer.py", line 323, in finish_request

    self.finish_request(request, client_address)

  File "/usr/lib/python2.7/SocketServer.py", line 323, in finish_request

127.0.0.1 - - [27/Feb/2014:16:59:36 -0700] "GET
/tool_runner?tool_id=upload1 HTTP/1.1" 200 - "http://localhost:20020/root";
"Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:27.0) Gecko/20100101
Firefox/27.0"

    self.RequestHandlerClass(request, client_address, self)

    self.RequestHandlerClass(request, client_address, self)

  File "/usr/lib/python2.7/SocketServer.py", line 640, in __init__

  File "/usr/lib/python2.7/SocketServer.py", line 640, in __init__

    self.RequestHandlerClass(request, client_address, self)

self.RequestHandlerClass(request, client_address, self)

  File "/usr/lib/python2.7/SocketServer.py", line 640, in __init__

    self.finish()

    self.RequestHandlerClass(request, client_address, self)

    self.finish()

    self.RequestHandlerClass(request, client_address, self)

    self.finish()

  File "/usr/lib/python2.7/SocketServer.py", line 693, in finish

  File "/usr/lib/python2.7/SocketServer.py", line 640, in __init__

  File "/usr/lib/python2.7/SocketServer.py", line 693, in finish

  File "/usr/lib/python2.7/SocketServer.py", line 640, in __init__

    self.RequestHandlerClass(request, client_address, self)

  File "/usr/lib/python2.7/SocketServer.py", line 693, in finish

  File "/usr/lib/python2.7/SocketServer.py", line 640, in __init__

  File "/usr/lib/python2.7/SocketServer.py", line 640, in __init__

    self.finish()

    self.finish()

  File "/usr/lib/python2.7/SocketServer.py", line 693, in finish

    self.wfile.flush()

    self.wfile.flush()

  File "/usr/lib/python2.7/SocketServer.py", line 693, in finish

    self.wfile.flush()

    self.finish()

  File "/usr/lib/python2.7/SocketServer.py", line 693, in finish

  File "/usr/lib/python2.7/socket.py", line 303, in flush

  File "/usr/lib/python2.7/socket.py", line 303, in flush

    self.wfile.flush()

    self.finish()

    self.wfile.flush()

  File "/usr/lib/python2.7/socket.py", line 303, in flush

    self.wfile.flush()

  File "/usr/lib/python2.7/SocketServer.py", line 693, in finish

  File "/usr/lib/python2.7/socket.py", line 303, in flush

  File "/usr/lib/python2.7/socket.py", line 303, in flush

  File "/usr/lib/python2.7/socket.py", line 303, in flush

    self.wfile.flush()

  File "/usr/lib/python2.7/socket.py", line 303, in flush

    self._sock.sendall(view[write_offset:write_offset+buffer_size])

    self._sock.sendall(view[write_offset:write_offset+buffer_size])

    self._sock.sendall(view[write_offset:write_offset+buffer_size])

    self._sock.sendall(view[write_offset:write_offset+buffer_size])

error: [Errno 32] Broken pipe

error: [Errno 32] Broken pipe

    self._sock.sendall(view[write_offset:write_offset+buffer_size])

----------------------------------------

    self._sock.sendall(view[write_offset:write_offset+buffer_size])

error: [Errno 32] Broken pipe

error: [Errno 32] Broken pipe

error: [Errno 32] Broken pipe

----------------------------------------

    self._sock.sendall(view[write_offset:write_offset+buffer_size])

----------------------------------------

error: [Errno 32] Broken pipe

----------------------------------------

----------------------------------------

error: [Errno 32] Broken pipe

----------------------------------------
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