Hi Rui,
Are you using the upload tool available in the tool panel under 'Get Data'
> 'Upload file from your computer'? Or the new upload dialog by clicking on
'Load Data'? Could you also please let me know if this error occurs always
or just sometimes?
Thanks Sam
On Thu, Feb 27, 2014 at 8:50 PM, ruiwang.sz <ruiwang...@gmail.com> wrote:
> Hi Guys,
>
> Our galaxy instance has been in use for a couple years but since Feb 2014
> it started to show us some weird behavior. Recently the upload function
> suddenly stopped working properly. We are getting messages like the
> following. I'm not sure if this only happens to us. If someone has seen
> this before, please give me some hints.
>
> P.S., I searched online and many says that this is because the browser
> does not wait till all the data from the server is received and closes the
> socket. However it happens both in firefox and chrome. I'm wondering if it
> is because galaxy has any change recently but when I do 'hg update stable'
> it reported that it is up to date.
>
> Thanks!
> Rui
>
> Error messages:
>
> Exception happened during processing of request from
> ('127.0.0.1'----------------------------------------
>
> Exception happened during processing of request from (, 52259'127.0.0.1',
> 52260)
>
> Traceback (most recent call last):
>
> )
>
> Traceback (most recent call last):
>
> File
> "/home/bioinfoadmin/app/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/httpserver.py",
> line 1068, in process_request_in_thread
>
> ----------------------------------------
>
> Exception happened during processing of request from
> (----------------------------------------
>
> File
> "/home/bioinfoadmin/app/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/httpserver.py",
> line 1068, in process_request_in_thread
>
> Exception happened during processing of request from'127.0.0.1' ,
> ('127.0.0.1'52264, 52262----------------------------------------
>
> )
>
> Exception happened during processing of request from
> ('127.0.0.1'----------------------------------------
>
> , )
>
> Traceback (most recent call last):
>
> Traceback (most recent call last):
>
> File
> "/home/bioinfoadmin/app/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/httpserver.py",
> line 1068, in process_request_in_thread
>
> File
> "/home/bioinfoadmin/app/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/httpserver.py",
> line 1068, in process_request_in_thread
>
> Exception happened during processing of request from 52261('127.0.0.1',
> ----------------------------------------
>
> )Exception happened during processing of request from
>
> Traceback (most recent call last):
>
> 52263('127.0.0.1')
>
> File
> "/home/bioinfoadmin/app/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/httpserver.py",
> line 1068, in process_request_in_thread
>
> Traceback (most recent call last):
>
> , 52265)
>
> File
> "/home/bioinfoadmin/app/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/httpserver.py",
> line 1068, in process_request_in_thread
>
> Traceback (most recent call last):
>
> File
> "/home/bioinfoadmin/app/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/httpserver.py",
> line 1068, in process_request_in_thread
>
> self.finish_request(request, client_address)
>
> File "/usr/lib/python2.7/SocketServer.py", line 323, in finish_request
>
> self.finish_request(request, client_address)
>
> File "/usr/lib/python2.7/SocketServer.py", line 323, in finish_request
>
> self.finish_request(request, client_address)
>
> self.finish_request(request, client_address)
>
> self.finish_request(request, client_address)
>
> File "/usr/lib/python2.7/SocketServer.py", line 323, in finish_request
>
> self.finish_request(request, client_address)
>
> File "/usr/lib/python2.7/SocketServer.py", line 323, in finish_request
>
> File "/usr/lib/python2.7/SocketServer.py", line 323, in finish_request
>
> File "/usr/lib/python2.7/SocketServer.py", line 323, in finish_request
>
> self.finish_request(request, client_address)
>
> File "/usr/lib/python2.7/SocketServer.py", line 323, in finish_request
>
> 127.0.0.1 - - [27/Feb/2014:16:59:36 -0700] "GET
> /tool_runner?tool_id=upload1 HTTP/1.1" 200 - "http://localhost:20020/root";
> "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:27.0) Gecko/20100101
> Firefox/27.0"
>
> self.RequestHandlerClass(request, client_address, self)
>
> self.RequestHandlerClass(request, client_address, self)
>
> File "/usr/lib/python2.7/SocketServer.py", line 640, in __init__
>
> File "/usr/lib/python2.7/SocketServer.py", line 640, in __init__
>
> self.RequestHandlerClass(request, client_address, self)
>
> self.RequestHandlerClass(request, client_address, self)
>
> File "/usr/lib/python2.7/SocketServer.py", line 640, in __init__
>
> self.finish()
>
> self.RequestHandlerClass(request, client_address, self)
>
> self.finish()
>
> self.RequestHandlerClass(request, client_address, self)
>
> self.finish()
>
> File "/usr/lib/python2.7/SocketServer.py", line 693, in finish
>
> File "/usr/lib/python2.7/SocketServer.py", line 640, in __init__
>
> File "/usr/lib/python2.7/SocketServer.py", line 693, in finish
>
> File "/usr/lib/python2.7/SocketServer.py", line 640, in __init__
>
> self.RequestHandlerClass(request, client_address, self)
>
> File "/usr/lib/python2.7/SocketServer.py", line 693, in finish
>
> File "/usr/lib/python2.7/SocketServer.py", line 640, in __init__
>
> File "/usr/lib/python2.7/SocketServer.py", line 640, in __init__
>
> self.finish()
>
> self.finish()
>
> File "/usr/lib/python2.7/SocketServer.py", line 693, in finish
>
> self.wfile.flush()
>
> self.wfile.flush()
>
> File "/usr/lib/python2.7/SocketServer.py", line 693, in finish
>
> self.wfile.flush()
>
> self.finish()
>
> File "/usr/lib/python2.7/SocketServer.py", line 693, in finish
>
> File "/usr/lib/python2.7/socket.py", line 303, in flush
>
> File "/usr/lib/python2.7/socket.py", line 303, in flush
>
> self.wfile.flush()
>
> self.finish()
>
> self.wfile.flush()
>
> File "/usr/lib/python2.7/socket.py", line 303, in flush
>
> self.wfile.flush()
>
> File "/usr/lib/python2.7/SocketServer.py", line 693, in finish
>
> File "/usr/lib/python2.7/socket.py", line 303, in flush
>
> File "/usr/lib/python2.7/socket.py", line 303, in flush
>
> File "/usr/lib/python2.7/socket.py", line 303, in flush
>
> self.wfile.flush()
>
> File "/usr/lib/python2.7/socket.py", line 303, in flush
>
> self._sock.sendall(view[write_offset:write_offset+buffer_size])
>
> self._sock.sendall(view[write_offset:write_offset+buffer_size])
>
> self._sock.sendall(view[write_offset:write_offset+buffer_size])
>
> self._sock.sendall(view[write_offset:write_offset+buffer_size])
>
> error: [Errno 32] Broken pipe
>
> error: [Errno 32] Broken pipe
>
> self._sock.sendall(view[write_offset:write_offset+buffer_size])
>
> ----------------------------------------
>
> self._sock.sendall(view[write_offset:write_offset+buffer_size])
>
> error: [Errno 32] Broken pipe
>
> error: [Errno 32] Broken pipe
>
> error: [Errno 32] Broken pipe
>
> ----------------------------------------
>
> self._sock.sendall(view[write_offset:write_offset+buffer_size])
>
> ----------------------------------------
>
> error: [Errno 32] Broken pipe
>
> ----------------------------------------
>
> ----------------------------------------
>
> error: [Errno 32] Broken pipe
>
> ----------------------------------------
>
>
>
>
> ___________________________________________________________
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