I built a glaxy cluster today,and then I found the job completion status of
torque queue is 'c',but the need state of galalxy is "ok".So I modified the
torque.py file and solved this error. I do, right?
diff -r 8411a9f30feb lib/galaxy/jobs/runners/cli_job/torque.py
--- a/lib/galaxy/jobs/runners/cli_job/torque.py Thu Dec 19 14:38:03 2013 -0500
+++ b/lib/galaxy/jobs/runners/cli_job/torque.py Fri Feb 28 13:02:48 2014 +0800
@@ -117,6 +117,8 @@
if id in job_ids:
state = job.find('job_state').text
# map PBS job states to Galaxy job states.
+ if state == u'C' :
+ state = 'ok'
rval[id] = self.__get_job_state(state)
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