Hi Shane, We had enabled this feature on our cluster working with PBS but since we switched to LSF, we never managed to have it working again. Same error as yours if I correctly remember. After hours spent looking into LSF, I think we understood that LSF somehow catches the user change and rejects the job. We finally gave up.
I am not sure this helps ... bw Charles On 5 Mar 2014, at 02:55, Shane Sturrock wrote: > Has anyone had any success in getting cluster jobs running as the real user? > I've got our server happily working with LSF via drmaa but all jobs run as > the galaxy user and I would like to be able to separate out the jobs on a per > user basis. I've followed the instructions at > https://wiki.galaxyproject.org/Admin/Config/Performance/Cluster#Submitting_Jobs_as_the_Real_User > but I'm having no luck with it so was wondering if someone would know how I > might debug it, like where could I find the script it is trying to execute? > All I'm getting is code 18: invalid LSF job id although it does seem to be > creating files in my databases/tmp directory owned by the user. > > Shane > > -- > Dr Shane Sturrock > [email protected] > Senior Scientist > Tel: +64 (0) 9 379 5064 > 76 Anzac Ave > Auckland > New Zealand > > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > http://lists.bx.psu.edu/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ ===================================== Charles Girardot Head of Genome Biology Computational Support (GBCS) European Molecular Biology Laboratory Tel: +49 6221 387 -8585 Fax: +49-(0)6221-387-8166 Email: [email protected] Room V205 Meyerhofstraße 1, 69117 Heidelberg, Germany ===================================== ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
