I'm trying to launch a mpi version of test tool.
To do so, I have a test xml called sleep.xml but all he does is write
the hostname of the machine in an output file.
(command: /usr/lib64/openmpi/bin/mpirun hostname > $output)
When I launch this tool as a local job (we use son of grid engine as the
job scheduler), everything is ok.
When i specify the following line in the universe_wsgi.xml:
sleep = drmaa://-q galaxy -pe openmpi 8/
The program is launched but it is lost somewhere and juste doesn't do
anything. It is just running and never ends.
Does someone has an explanation for that ?
Thanks in advance,
Olivia Doppelt-Azeroual, PhD
Tel: 92 15
CIB - Institut Pasteur
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