Do you have a lot of repositories installed from the Tool Shed into you Galaxy
instance? if so, the time you're experience may be due to loading the
in-memory installed repository registry. Using this registry is optional, but
the default configuration setting is to use it. You can set the following to
entry to False in your universe_wsgi.ini file and restart your Galaxy server to
see if that is the problem. This registry is not currently used by anythin
except to display the set of dependent repositories that will be affected if a
repository is uninstalled. If this is ot what is causing the slow statup, then
I'm not sure where else to look.
# Enable use of an in-memory registry with bi-directional relationships
# between repositories (i.e., in addition to lists of dependencies for a
# repository, keep an in-memory registry of dependent items for each repository.
#manage_dependency_relationships = True
Greg Von Kuster
On Mar 25, 2014, at 11:08 AM, Geert Vandeweyer
> Dear all,
> I'm wondering if the following behaviour is normal. Since I reinstalled the
> latest galaxy distribution, every restart hangs/loads for up to 10 minutes at
> the following lines:
> galaxy.model.migrate.check INFO 2014-03-25 15:56:57,965 At database version
> tool_shed.galaxy_install.migrate.check INFO 2014-03-25 15:56:58,477 At
> migrate_tools version 9
> galaxy.config INFO 2014-03-25 15:56:58,694 Install database targetting
> Galaxy's database configuration.
> After several minutes of no heavy processing (cpu/database is almost idle),
> the startup continues.
> Geert Vandeweyer, Ph.D.
> Department of Medical Genetics
> University of Antwerp
> Prins Boudewijnlaan 43
> 2650 Edegem
> Tel: +32 (0)3 275 97 56
> E-mail: geert.vandewe...@ua.ac.be
> Please keep all replies on the list by using "reply all"
> in your mail client. To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
> To search Galaxy mailing lists use the unified search at:
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
To search Galaxy mailing lists use the unified search at: