The setting should be in your universe_wsgi.ini.sample, and you woud have to
manually edit your universe_wsgi.ini to add it. I would say that 125 installed
packages is probably what is causing the slow starts. This feature is not
currently useful, so it can be set to not function with no problems. In the
future I'll introduce additional benefits for this feature, and I'll look at
ways to improve the startup speed.
Greg Von Kuster
On Mar 26, 2014, at 3:43 AM, Geert Vandeweyer <geert.vandewey...@uantwerpen.be>
> hi Greg,
> I don't have that setting in my universe. Should I just add it? The output of
> hg summary is (hg incoming doesn't show any available updates):
> parent: 12276:dc067a95261d tip
> Added tag release_2014.02.10 for changeset 5e605ed6069f
> branch: stable
> commit: 22 modified, 1 deleted, 127 unknown
> update: (current)
> I currently have 125 packages from toolsheds. Is that considered to be
> "many"? Most of them are the migrated tools and the devteam
> mappers/gatk/tophat stuff.
> On 03/25/2014 05:16 PM, Greg Von Kuster wrote:
>> Hello Geert,
>> Do you have a lot of repositories installed from the Tool Shed into you
>> Galaxy instance? if so, the time you're experience may be due to loading
>> the in-memory installed repository registry. Using this registry is
>> optional, but the default configuration setting is to use it. You can set
>> the following to entry to False in your universe_wsgi.ini file and restart
>> your Galaxy server to see if that is the problem. This registry is not
>> currently used by anythin except to display the set of dependent
>> repositories that will be affected if a repository is uninstalled. If this
>> is ot what is causing the slow statup, then I'm not sure where else to look.
>> # Enable use of an in-memory registry with bi-directional relationships
>> # between repositories (i.e., in addition to lists of dependencies for a
>> # repository, keep an in-memory registry of dependent items for each
>> #manage_dependency_relationships = True
>> Greg Von Kuster
>> On Mar 25, 2014, at 11:08 AM, Geert Vandeweyer
>> <geert.vandewey...@uantwerpen.be> wrote:
>>> Dear all,
>>> I'm wondering if the following behaviour is normal. Since I reinstalled the
>>> latest galaxy distribution, every restart hangs/loads for up to 10 minutes
>>> at the following lines:
>>> galaxy.model.migrate.check INFO 2014-03-25 15:56:57,965 At database version
>>> tool_shed.galaxy_install.migrate.check INFO 2014-03-25 15:56:58,477 At
>>> migrate_tools version 9
>>> galaxy.config INFO 2014-03-25 15:56:58,694 Install database targetting
>>> Galaxy's database configuration.
>>> After several minutes of no heavy processing (cpu/database is almost idle),
>>> the startup continues.
>>> Geert Vandeweyer, Ph.D.
>>> Department of Medical Genetics
>>> University of Antwerp
>>> Prins Boudewijnlaan 43
>>> 2650 Edegem
>>> Tel: +32 (0)3 275 97 56
>>> E-mail: geert.vandewe...@ua.ac.be
>>> Please keep all replies on the list by using "reply all"
>>> in your mail client. To manage your subscriptions to this
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> Geert Vandeweyer, Ph.D.
> Department of Medical Genetics
> University of Antwerp
> Prins Boudewijnlaan 43
> 2650 Edegem
> Tel: +32 (0)3 275 97 56
> E-mail: geert.vandewe...@ua.ac.be
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
To search Galaxy mailing lists use the unified search at: