On 31/03/2014 17:01, Luca Toldo wrote:
Dear Galaxians,
I have galaxy running fine on a 8cpu machine, however I need to have
it submitting jobs to a linux cluster using PBS.
I got universe and job_conf.xml setup and as far as I use the local
runner, everything is fine.
However, whenever I try (e.g. clustalw) to use the DRMAAJobRunner, the
UI shows "this job is waiting to run" and nothing literally happens.
My question is "what to do to test what's going on". I searched for a
tutorial but coulnd't find it...
Looking forward your advice and thankyou so much !
Luca
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Hi,
I would say that the first thing to do is to try to submit a job from
your Galaxy server and with your Galaxy user to see if your Galaxy
server is well defined as a submit host and your Galaxy user authorized
to submit jobs.
Regards,
Thomas
--
Thomas Bellembois, Network and System Administrator
ENS-Lyon/IGFL - FRANCE
+33 4 26 73 13 67
.The IGFL is a member of the "portail-labos" project
(https://portail-labos.ens-lyon.fr/site/).
.IGFL IT documentation: http://itdoc.igfl.ens-lyon.fr/itdoc
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