This might be due to different version of Galaxy. Is the "Job Command-Line" listed? - Depending on the tool, you might find the path there.

Hans-Rudolf



:Do you have the will also find the path in the "job command

On 04/03/2014 09:03 AM, Nilaksha Neththikumara wrote:
Hi,
Thanks a lot for the answer. But I'm afraid that detail panel does not
give me the path to the dataset. Have you encountered this problem before?

Nilaksha


On Thu, Apr 3, 2014 at 12:26 PM, Hans-Rudolf Hotz <h...@fmi.ch
<mailto:h...@fmi.ch>> wrote:

    Hi Nilaksha

    Use the "!" icon (View details) to get the full path to the data
    set, and the use 'cp' or 'scp' (if not on the same host) on your
    terminal.


    Hope this helps, Hans-Rudolf



    On 04/03/2014 07:27 AM, Nilaksha Neththikumara wrote:

        Hello all,

        I'm currently successfully running a pipeline for metagenomic
        analysis
        on my locally installed galaxy instance and everything seemed to
        good by
        far. But when I'm trying to download my processed blast xml
        output (I
        used blast+ wrappers for this) , by clicking the small disk button
        nothing happens. I tried several options.
        1) clicked the 'disk' icon to initiate the downloading
        2) right clicked the 'disk' icon and tried to use saved linked
        as, but a
        dialog box doesnot appear for saving
        3) tried copying the link and used curl on bash terminal, but
        progress
        bar is stuck at 0%.

        I think this is happening because my blast output dataset is
        much larger
        (around ~10GB) , but if that's the case, how am I supposed to
        get the
        data out of galaxy any way??

        Thank a lot in advance.

        Regards!
        Nilaksha


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