Never mind, I figured it out. I deleted all instances of the job and the temp dataset. Thanks R On Apr 4, 2014, at 2:29 PM, Ravi Alla <ravi.a...@berkeley.edu> wrote:
> Anyone please?? I cannot even start the galaxy server. Makes me wonder if > something in the database got messed up. > On Apr 4, 2014, at 11:16 AM, Ravi Alla <ravi.a...@berkeley.edu> wrote: > >> Hi devs, >> I deleted a tool called upload_local_file and tried to restart galaxy server >> but I keep getting the following error. Any idea how to solve this? >> >> File >> "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/webapps/galaxy/buildapp.py", >> line 39, in app_factory >> app = UniverseApplication( global_conf = global_conf, **kwargs ) >> File "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/app.py", line 130, in >> __init__ >> self.job_manager = manager.JobManager( self ) >> File "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/jobs/manager.py", line >> 37, in __init__ >> self.job_handler.start() >> File "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/jobs/handler.py", line >> 35, in start >> self.job_queue.start() >> File "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/jobs/handler.py", line >> 78, in start >> self.__check_jobs_at_startup() >> File "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/jobs/handler.py", line >> 109, in __check_jobs_at_startup >> JobWrapper( job, self ).fail( 'This tool was disabled before the job >> completed. Please contact your Galaxy administrator.' ) >> File "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/jobs/__init__.py", >> line 761, in fail >> self.app.object_store.update_from_file(dataset.dataset, create=True) >> File >> "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/objectstore/__init__.py", >> line 349, in update_from_file >> self.create(obj, **kwargs) >> File >> "/srv/www/galaxy/source/galaxy-dist/lib/galaxy/objectstore/__init__.py", >> line 298, in create >> open(path, 'w').close() # Should be rb? >> IOError: [Errno 2] No such file or directory: >> '/global/scratch/galaxy/webapp/files/000/dataset_194.dat' >> >> Thanks >> Ravi >
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