This patch updates bjorn’s bismark wrapper to work with latest bismark and 
allows methylation extraction from SAM or BAM files.
It no longer sorts the BAM from bismark (to allow methylation extraction to 
work).

Attachment: bismark_patch.diff
Description: bismark_patch.diff


Comments/corrections welcome.

brad
--
Brad Langhorst, Ph.D.
Applications and Product Development Scientist

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