I’ve figured this one out. The tool id changed one me. Sorry for the spam.
-j

On Apr 9, 2014, at 4:48 PM, John Marmaduke Eppley <jmepp...@mit.edu> wrote:

> The API interface is translating my parameters into python repr strings 
> instead of actual strings.
> 
> A command that should look like this:
> createPrimerFile.py 
> /minilims/galaxy-data/primerTemplates/nextera.2x.primers.fasta NNNNNN NNNNNN 
> > /slipstream/galaxy/production/data/files/020/dataset_20664.dat
> 
> is getting run as this:
> createPrimerFile.py 
> /minilims/galaxy-data/primerTemplates/nextera.2x.primers.fasta 
> __lt__galaxy.tools.parameters.basic.RuntimeValue object at 0x792be10__gt__ 
> NNNNNN > /slipstream/galaxy/production/data/files/020/dataset_20728.dat
> 
> The input table in the tool info page is:
> Input Parameter       Value   Note for rerun
> chemistry type:       <galaxy.tools.parameters.basic.RuntimeValue object at 
> 0x7fee4425ca10>   
> First barcode NNNNNN  
> Second (optional) barcode     NNNNNN
> 
> 
> I’m running a slightly out of date version of Galaxy (I think it is change 
> set 11080:87b586afb054) because this is BioTeam’s Slipstream appliance. Is 
> there any chance this is a known bug? I didn’t see anything in Trello, but 
> I’m really not sure I’ve got the hang of Trello yet.
> 
> Thanks
> -john
> 
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