The API interface is translating my parameters into python repr strings instead
of actual strings.
A command that should look like this:
createPrimerFile.py
/minilims/galaxy-data/primerTemplates/nextera.2x.primers.fasta NNNNNN NNNNNN >
/slipstream/galaxy/production/data/files/020/dataset_20664.dat
is getting run as this:
createPrimerFile.py
/minilims/galaxy-data/primerTemplates/nextera.2x.primers.fasta
__lt__galaxy.tools.parameters.basic.RuntimeValue object at 0x792be10__gt__
NNNNNN > /slipstream/galaxy/production/data/files/020/dataset_20728.dat
The input table in the tool info page is:
Input Parameter Value Note for rerun
chemistry type: <galaxy.tools.parameters.basic.RuntimeValue object at
0x7fee4425ca10>
First barcode NNNNNN
Second (optional) barcode NNNNNN
I’m running a slightly out of date version of Galaxy (I think it is change set
11080:87b586afb054) because this is BioTeam’s Slipstream appliance. Is there
any chance this is a known bug? I didn’t see anything in Trello, but I’m really
not sure I’ve got the hang of Trello yet.
Thanks
-john
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at:
http://galaxyproject.org/search/mailinglists/
