I saw the same phenomenon. I think it stems from the current version of
compute_q_values pointing to unavailable revisions of both R and the
bioc_qvalue R package. Whoever maintains the compute_q_values needs to
straighten out the revision ids.
Helix Systems Staff
National Institutes of Health
On Apr 17, 2014, at 1:38 PM, Tony Kusalik <kusa...@cs.usask.ca> wrote:
> I am having a problem with updating our local Galaxy server, and I am hoping
> someone can help me.
> Yesterday I performed a 'hg incoming' command. A bunch of updates were
> applied, from changeset 12443:ec9d31a8bc04
> to changeset 13068:c05752549163. I restarted the server (in daemon mode),
> but it halted.
> The content of paster.log instructed me to run
> sh ./scripts/migrate_tools/0010_tools.sh
> I did that. That script encountered an error:
> The following error occurred from the InstallManager while installing tool
> dependency bioc_qvalue :
> Error installing tool dependency package bioc_qvalue version 1.34.0: Unable
> to locate required tool shed repository named package_bioc_qvalue_1_34_0
> owned by devteam with revision 11735242a19e.
> How do I get around this problem?
> I checked the mailing lists for anyone reporting a problem with "bioc_qvalue"
> or "11735242a19e"
> but nothing was turned up.
> Tony Kusalik
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Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
To search Galaxy mailing lists use the unified search at: