Dear all
I am using this control to allow the user to input multiple files:
<param name="input_vcfs" type="data" multiple="true" format="vcf"
label="Input VCF file(s)" />
and I am using this for loop in the cheetah code to access the control:
<command interpreter="bash">
script.sh
...
#for $i, $input_vcf in enumerate( $input_vcfs ):
"${input_vcf}",
#end for
</command>
It appears that when a user selects many files (25 in this case) the
bash command in the command tag never gets executed. Therefore the job
is never queued. The history item shows 'Waiting to run' indefinitely.
Calling the script.sh manually with 25 input files works fine.
Any hint as to how to debug this would be greatly appreciated.
Thanks a lot
Ulf
**************************************************************************
The information contained in the EMail and any attachments is confidential and
intended solely and for the attention and use of the named addressee(s). It may
not be disclosed to any other person without the express authority of Public
Health England, or the intended recipient, or both. If you are not the intended
recipient, you must not disclose, copy, distribute or retain this message or
any part of it. This footnote also confirms that this EMail has been swept for
computer viruses by Symantec.Cloud, but please re-sweep any attachments before
opening or saving. http://www.gov.uk/PHE
**************************************************************************
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at:
http://galaxyproject.org/search/mailinglists/