On Tue, Apr 22, 2014 at 3:02 PM, Ulf Schaefer <ulf.schae...@phe.gov.uk> wrote:
> Dear all
>
> I am using this control to allow the user to input multiple files:
>
> <param name="input_vcfs" type="data" multiple="true" format="vcf"
> label="Input VCF file(s)" />
>
> and I am using this for loop in the cheetah code to access the control:
> <command interpreter="bash">
> script.sh
> ...
> #for $i, $input_vcf in enumerate( $input_vcfs ):
>      "${input_vcf}",
> #end for
> </command>

The $i and enumerate seem unnecessary here.

> It appears that when a user selects many files (25 in this case) the
> bash command in the command tag never gets executed. Therefore the job
> is never queued. The history item shows 'Waiting to run' indefinitely.
> Calling the script.sh manually with 25 input files works fine.
>
> Any hint as to how to debug this would be greatly appreciated.
>
> Thanks a lot
> Ulf

Can you see anything in the log about the job, and in particular
the command line it would attempt to run?

Peter
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