On Tue, Apr 22, 2014 at 3:02 PM, Ulf Schaefer <ulf.schae...@phe.gov.uk> wrote:
> Dear all
> I am using this control to allow the user to input multiple files:
> <param name="input_vcfs" type="data" multiple="true" format="vcf"
> label="Input VCF file(s)" />
> and I am using this for loop in the cheetah code to access the control:
> <command interpreter="bash">
> script.sh
> ...
> #for $i, $input_vcf in enumerate( $input_vcfs ):
>      "${input_vcf}",
> #end for
> </command>

The $i and enumerate seem unnecessary here.

> It appears that when a user selects many files (25 in this case) the
> bash command in the command tag never gets executed. Therefore the job
> is never queued. The history item shows 'Waiting to run' indefinitely.
> Calling the script.sh manually with 25 input files works fine.
> Any hint as to how to debug this would be greatly appreciated.
> Thanks a lot
> Ulf

Can you see anything in the log about the job, and in particular
the command line it would attempt to run?

Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:

To search Galaxy mailing lists use the unified search at:

Reply via email to