Does anyone have any tips about this, please :)?


[] On Behalf Of Hakeem Almabrazi
Sent: Monday, April 21, 2014 3:49 PM
Subject: [galaxy-dev] DRMAA configuring issue


I am trying to get DRMAA runner working for my local galaxy cluster.  However, 
I am having hard time configuring it my system.

So far,

I have installed Torque 2.5.12 and it seems to work as expected.

I installed drmaa_1.0.17 and here is DRMAA_LIBRARY_PATH
galaxy_env)galaxy@GalaxyTest01[/home/galaxy/galaxy-dist]$ echo 

My job.conf.xml
<?xml version="1.0"?>
<!-- A sample job config that explicitly configures job running the way it is 
configured by default (if there is no explicit config). -->
         <plugin id="sge" type="runner" 
load="" workers="4"/>
   <handlers default="handlers">
        <handler id="main" tags="handlers"/>
   <destinations default="sge_default">
          <destination id="sge_default" runner="drmaa"/>

This is the error I am getting when I start galaxy. INFO 2014-04-21 15:37:30,730 Handler 'main' will load all 
configured runner plugins
Traceback (most recent call last):
  File "/home/galaxy/galaxy-dist/lib/galaxy/webapps/galaxy/", line 
39, in app_factory
    app = UniverseApplication( global_conf = global_conf, **kwargs )
  File "/home/galaxy/galaxy-dist/lib/galaxy/", line 130, in __init__
    self.job_manager = manager.JobManager( self )
  File "/home/galaxy/galaxy-dist/lib/galaxy/jobs/", line 31, in 
    self.job_handler = handler.JobHandler( app )
  File "/home/galaxy/galaxy-dist/lib/galaxy/jobs/", line 30, in 
    self.dispatcher = DefaultJobDispatcher( app )
  File "/home/galaxy/galaxy-dist/lib/galaxy/jobs/", line 568, in 
    self.job_runners = )
  File "/home/galaxy/galaxy-dist/lib/galaxy/jobs/", line 489, in 
    rval[id] = runner_class(, runner[ 'workers' ], **runner.get( 
'kwds', {} ) )
  File "/home/galaxy/galaxy-dist/lib/galaxy/jobs/runners/", line 81, in 
  File "/home/galaxy/galaxy-dist/eggs/drmaa-0.6-py2.6.egg/drmaa/", 
line 274, in initialize
  File "/home/galaxy/galaxy-dist/eggs/drmaa-0.6-py2.6.egg/drmaa/", 
line 59, in init
    return _lib.drmaa_init(contact, error_buffer, sizeof(error_buffer))
  File "/home/galaxy/galaxy-dist/eggs/drmaa-0.6-py2.6.egg/drmaa/", 
line 90, in error_check
    raise _ERRORS[code-1]("code %s: %s" % (code, error_buffer.value))
DrmCommunicationException: code 2: (null)
Removing PID file

I am not sure what is the issue here or how to go about resolving it.  I will 
really appreciate it if someone can tell me how to debug it?

Best regards


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