I feel like someone should respond to this but I must admin I don't
have a lot of ideas.
I assume you are able to use qsub to submit jobs from the Galaxy
server? This is worth verifying that before anything else. If that
doesn't work - the system configuration needs to be modified.
I think there are a couple different implementations of DRMAA for PBS:
http://apps.man.poznan.pl/trac/pbs-drmaa (I think this is recommend one).
It might be worth trying to compile the latest and great of one or
both and target both.
Galaxy also has a PBS runner that many people use for communicating
with Torque. I think the DRMAA runner should work - but this is a
fallback option as well just to get going.
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