I'm writing a tool_dependencies.xml file for a python package.
It defines an action type="setup_virtualenv", and when I install it to
my galaxy from the test shed it is actually installed into
~/environments, and the tool definition is set up correctly.
This package includes a callable script, when I install the package on a
virtualenv using pip, the path to the CLI tool is inserted to the PATH
and I can call it anywhere.
But when I run the tool from galaxy it cannot find the script. Does the
setup_virtualenv action also update the PATH?
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