Hello List,

I'm writing a tool_dependencies.xml file for a python package.
It defines an action type="setup_virtualenv", and when I install it to my galaxy from the test shed it is actually installed into ~/environments, and the tool definition is set up correctly.

This package includes a callable script, when I install the package on a virtualenv using pip, the path to the CLI tool is inserted to the PATH and I can call it anywhere.

But when I run the tool from galaxy it cannot find the script. Does the setup_virtualenv action also update the PATH?


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