-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 I'd want to open up discussion on a feature I'd like to see. I'll try and implement it if I can find time this summer. I didn't see a trello card for anything like this yet, but please feel free to direct me there if I missed it.
I'd like to see citations as a part of every tool. This would happen in the form of a <citation> block in the XML, which would contain sub-elements with text. These sub-elements could be based off of BibTeX, since they have existing specs for citing things: https://en.wikipedia.org/wiki/BibTeX These citations would then be accessible in the HTML generated tool pages, or via a View/Download button somewhere on the tool page. By storing as an XML tree, we could render these citations as BibTeX entries for the LaTeX users, and I believe there are ways to convert BibTeX to EndNote XML and so on. This could be extended for use in workflows so that when you run workflows, somehow a list of citations for all tools used could be generated. Anyone have thoughts or opinions on this? Using the example bibtex entry from the wikipedia page: @Book{abramowitz+stegun, author = "Milton {Abramowitz} and Irene A. {Stegun}", title = "Handbook of Mathematical Functions with Formulas, Graphs, and Mathematical Tables", publisher = "Dover", year = 1964, address = "New York", edition = "ninth Dover printing, tenth GPO printing" } I imagine it'd look like the following in a real-life tool: <tool> ... <citation type="book"> <author>Milton Abramowitz and Irene A. Stegun"</author> <title>Handbook of Mathematical Functions with Formulas, Graphs, and Mathematical Tables</title> <publisher>Dover</publisher> <year>1964</year> <address>New York</address> <edition>ninth Dover printing, tenth GPO printing</edition> </citation> </tool> Cheers, Eric - -- Eric Rasche Programmer II Center for Phage Technology Texas A&M University College Station, TX 77843 404-692-2048 e...@tamu.edu rasche.e...@yandex.ru -----BEGIN PGP SIGNATURE----- Version: GnuPG v2.0.17 (GNU/Linux) iQIcBAEBAgAGBQJThMEUAAoJEMqDXdrsMcpVe9AP/1BjPbP5JdK6KDybOeV2ElvC jvmUGetAjdQzkKO1Ikeuxb46yp0j4abAGGG92AccxlBYALsT3jsPv5dYjm505vcU IwlfTBE7gc5y19x3zx1CuAd7PB11tryODz2LwXNKI75f39bNdX6Qe5aA74Vn/k8a FBeFL/EvkZwI8Z6CvuTGtZrEHvDXVvTFoxMX875f59g2vNy7W8Fh5wQCQ8qgiogi 0SWGIGZ6OJdqX60h2hOjJ06NhzBcTsjQea+AwTo5wAkyGPFJy4DV78jKOvsd5PMG qkk4U6gBcmcFolCeItlLPa/C4uiyOK2wVWHyTnEeKjdpD6dwLuemRmwtZrModbQu PPPFkKzQhUnh5Wgq8TIP4kSc2t1/jSpdV8MHqM0piqOFnR52fExPrwLn82WEFcp8 tXfHHTaZj+6gL+IGswdAgqvxk1V+6QTjH57igWmYtcENpIDbhZVBh+HOD8SS2qdv ohwFg/Vn8VrCeTGGehNSBvkam0HXjXXq7mZ8W4xrOS8vxv8HPAFZHze2sPlUG/Ob WeOdiLgD2HCH95SXYDDBNFG6HwFkLETA3DjpfvgHqPdaLmEfIZW+ks1WF9RG+Pmo jhbWH8OmtTk5A/Zh63uRowMaDe7QSCruPIfIwlrgqLozOj8htMyJPBIW9oZGGkqC 7Vu5UFeL8gcigRmQv5NA =ceAo -----END PGP SIGNATURE----- ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
