I'm not sure what you mean. I'm not using python virtual env, anaconda etc But I do set all variables which are required to run Galaxy such as DRMAA path, PYTHONPATH. In addition to the default Python 2.6, I also tried Python 2.7 built from source.
On 13 June 2014 17:34, Kandalaft, Iyad <iyad.kandal...@agr.gc.ca> wrote: > Just for my curiosity, are you running a python environment isolated for > galaxy or just using a system wide python environment? > > > > Regards, > > > > *Iyad Kandalaft* > > Microbial Biodiversity Bioinformatics > > Agriculture and Agri-Food Canada | Agriculture et Agroalimentaire Canada > 960 Carling Ave.| 960 Ave. Carling > > Ottawa, ON| Ottawa (ON) K1A 0C6 > > E-mail Address / Adresse courriel iyad.kandal...@agr.gc.ca > Telephone | Téléphone 613-759-1228 > Facsimile | Télécopieur 613-759-1701 > Teletypewriter | Téléimprimeur 613-773-2600 > Government of Canada | Gouvernement du Canada > > > > > > > > *From:* galaxy-dev-boun...@lists.bx.psu.edu [mailto: > galaxy-dev-boun...@lists.bx.psu.edu] *On Behalf Of *INKozin > *Sent:* Thursday, June 12, 2014 11:35 AM > *To:* galaxy-dev@lists.bx.psu.edu > > *Subject:* Re: [galaxy-dev] troubleshooting Galaxy with LSF > > > > > > The problem seems to be with DRMAA for Python. While it works fine on the > OpenSuse > > 12.1 box, I'm getting a segfault on RH 6.4. > Surprisingly, the job however gets submitted and run successfully. > > >
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