Hi all

We frequently use the syntax below to rename outputs of workflows that 
we run in batch. It is convenient to have sample names from fastqs 
carried over to sams, bams, vcfs, etc.

#{input1 | basename}.bam

This does not seem to be working for inputs that are in repeats, e.g. 
the VelvetOptimiser. Does anybody know if there is a syntax to make this 
work, maybe

#{repeatname[0].input1 | basename}.bam ?

Thanks a lot for your help

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