I'm trying to use variant_recalibrator, xy_plot and other tools that
depend on package_r_2_11_0 and require ggplot2 to be installed. Since
CRAN support for R 2.11.0 and 2.15.0 is on the out, perhaps its a
better idea to update the packages the depend on those versions to R
3.0 or 3.1? The variant_recalibrator tool generates an Rscript
incompatible with modern versions of ggplot2, so this could be a quite
Meanwhile I'll look into the download_store option. You download all
of the tarballs and install them individually with R CMD INSTALL?
Research Associate | Application Developer | User Support Consultant
Minnesota Supercomputing Institute
599 Walter Library
612 624 1447
On Tue, Jul 29, 2014 at 2:46 PM, Björn Grüning
> Hi Evan,
> do you have somehow access to this tarball? Than we can put it on
> I use that to host R packages to save them for reproducibility.
>> Can I install another package_r and have packages that depend on
>> package_r_2_11_0 use the newer version?
> I don't think so. But that depends very much on your package. Is it not
> possible to use a newer R version? In either case you should save all
> tarballs somehow to archive them!
>> -Evan Bollig
>> Research Associate | Application Developer | User Support Consultant
>> Minnesota Supercomputing Institute
>> 599 Walter Library
>> 612 624 1447
>> Please keep all replies on the list by using "reply all"
>> in your mail client. To manage your subscriptions to this
>> and other Galaxy lists, please use the interface at:
>> To search Galaxy mailing lists use the unified search at:
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
To search Galaxy mailing lists use the unified search at: