Thanks for the update, glad everything is working as expected!
On Wed, Aug 13, 2014 at 12:27 PM, Tony Kusalik <kusa...@cs.usask.ca> wrote: > My apologies to everyone. This turns out to be a false alarm. > The problem was caused by a strange, intermittent issue with the > DNS servers on our campus (I'll spare you the gory details). > The problem boiled down to python on my server not being able to > find http://eggs.galaxyproject.org. > > On Aug 12, 2014, at 13:13 , Tony Kusalik <kusa...@cs.usask.ca> wrote: > > > Hi, > > > > I installed the latest set of changes to Galaxy, and now the Galaxy > server will not start up. I am hoping someone can point me to the source > of the problem and/or a fix. > > > > This morning my Galaxy server was running just fine. I did a > > hg incoming > > and was told that a fair number of changes were waiting to be applied, > > changeset 13772 through changeset 14309. Fine. I did > > hg pull -u > > and got > > searching for changes > > adding changesets > > adding manifests > > adding file changes > > added 538 changesets with 1738 changes to 542 files > > 473 files updated, 0 files merged, 152 files removed, 0 files unresolved > > Fine. > > However, now my Galaxy server will not start up and run. On > > sh run.sh --daemon > > the server dies with the following produced in paster.log > > where /birl2/Galaxy/galaxy-dist is the name of the installation > > directory. > > > > -- begin paster.log -- > > > > Traceback (most recent call last): > > File "./scripts/paster.py", line 33, in <module> > > serve.run() > > File "/birl2/Galaxy/galaxy-dist/lib/galaxy/util/pastescript/serve.py", > line 10 > > 49, in run > > invoke(command, command_name, options, args[1:]) > > File "/birl2/Galaxy/galaxy-dist/lib/galaxy/util/pastescript/serve.py", > line 10 > > 55, in invoke > > exit_code = runner.run(args) > > File "/birl2/Galaxy/galaxy-dist/lib/galaxy/util/pastescript/serve.py", > line 22 > > 0, in run > > result = self.command() > > File "/birl2/Galaxy/galaxy-dist/lib/galaxy/util/pastescript/serve.py", > line 64 > > 3, in command > > app = loadapp( app_spec, name=app_name, relative_to=base, > global_conf=vars) > > File > "/birl2/Galaxy/galaxy-dist/lib/galaxy/util/pastescript/loadwsgi.py", line > > 350, in loadapp > > return loadobj(APP, uri, name=name, **kw) > > File > "/birl2/Galaxy/galaxy-dist/lib/galaxy/util/pastescript/loadwsgi.py", line > > 374, in loadobj > > global_conf=global_conf) > > File > "/birl2/Galaxy/galaxy-dist/lib/galaxy/util/pastescript/loadwsgi.py", line > > 399, in loadcontext > > global_conf=global_conf) > > File > "/birl2/Galaxy/galaxy-dist/lib/galaxy/util/pastescript/loadwsgi.py", line > > 423, in _loadconfig > > return loader.get_context(object_type, name, global_conf) > > File > "/birl2/Galaxy/galaxy-dist/lib/galaxy/util/pastescript/loadwsgi.py", line > > 561, in get_context > > section) > > File > "/birl2/Galaxy/galaxy-dist/lib/galaxy/util/pastescript/loadwsgi.py", line > > 620, in _context_from_explicit > > value = import_string(found_expr) > > File > "/birl2/Galaxy/galaxy-dist/lib/galaxy/util/pastescript/loadwsgi.py", line > > 125, in import_string > > return pkg_resources.EntryPoint.parse("x=" + s).load(False) > > File "/birl2/Galaxy/galaxy-dist/lib/pkg_resources.py", line 1954, in > load > > entry = __import__(self.module_name, globals(),globals(), > ['__name__']) > > File "/birl2/Galaxy/galaxy-dist/lib/galaxy/web/__init__.py", line 4, in > <modul > > e> > > from framework import expose > > File "/birl2/Galaxy/galaxy-dist/lib/galaxy/web/framework/__init__.py", > line 48 > > , in <module> > > eggs.require( "amqp" ) > > File "/birl2/Galaxy/galaxy-dist/lib/galaxy/eggs/__init__.py", line 414, > in req > > uire > > raise EggNotFetchable( str( [ egg.name for egg in e.eggs ] ) ) > > galaxy.eggs.EggNotFetchable: ['amqp'] > > Removing PID file paster.pid > > > > -- end paster.log -- > > > > The above is the complete content of paster.log. > > > > Anyone have any idea what the problem is? More importantly, how do I > fix the problem > > and get Galaxy running again? > > > > > > > > ___________________________________________________________ > > Please keep all replies on the list by using "reply all" > > in your mail client. To manage your subscriptions to this > > and other Galaxy lists, please use the interface at: > > http://lists.bx.psu.edu/ > > > > To search Galaxy mailing lists use the unified search at: > > http://galaxyproject.org/search/mailinglists/ > > > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > http://lists.bx.psu.edu/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ >
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
