About the datatype. So you are thinking of a new datatype that applies to
files that hold the versioned database contents (in this case a structured
key-value fasta identifier/sequence pairs, right?) Then the fasta archive
versioning tool would take only files of that datatype for input. That sounds
I was just going to have one folder (and its subfolders) in the data library
that hold all the versioned databases to choose from. So the versioned
database tool would just populate its input list based on that subfolder tree.
But ensuring that it lists only files of a certain datatype sounds beneficial.
Output in any case would be a fasta file that other tools are already
expecting; I wasn't going to leave that as just "fasta" datatype since it seems
tools like makeblastdb don't allow anything else as input from user history.
I'm hoping that a global (admin) API key can be used by the tool so that all
users can get versioned data, but maybe that is a pipe dream.
Sure I'd like to see old patches!
From: Bj?rn Gr?ning [bjoern.gruen...@gmail.com]
Sent: Saturday, August 23, 2014 12:17 AM
To: Dooley, Damion; email@example.com
Cc: Hsiao, William
Subject: Re: [galaxy-dev] Concept for a Galaxy Versioned Fasta Data Retrieval
the idea sounds fantastic!
Can we go a step further and use a specific datatype that keeps entire
fasta files versioned and the user can choose which version he wants to
use, in any tool? Please have a look at my talk at GCC2012. Maybe you
are interested in the (old) patches. I would be very interested to
restart this old project.
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