On Fri, Sep 26, 2014 at 3:01 PM, Nikos Sidiropoulos
<nikos.sid...@gmail.com> wrote:
> Hi all,
> In a tool that I am writting I want to pass an input parameter value
> (string) into the output file's metadata. Meaning that one of the tool
> parameters is a barcode signature, 'NNWTGXN' for example. I want that
> attribute to be stored somehow in the output file in order to be read by a
> subsequent tool without the user having to set that parameter again.
> The files I'll be working with are in FASTQ, BAM and tabular format.
> Is it possible?
> Bests,
> Nikos

Your code can write the value directly into an output file
(e.g. one of the SAM/BAM headers might work), but I
don't think there is anything suitable within Galaxy for
re-exporting the parameter value as an input parameter
for a future tool.

However, at the workflow level you can set variables -
might that be a way forward?


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