Dear all

Usually the alignment statistics from bowtie2 will be printed to the stderr
file, however, on the local instance, the stderr file is empty after
alignment. It still does the alignment, but the statistics are not printed

This is my hg summary:
parent: 13802:f7dd0060c296 latest_2014.06.02
 Merged in dannon/galaxy-central-prmaker/stable (pull request #404)
branch: stable
commit: 288 modified, 357 added, 18 unknown (new branch head)
update: 27 new changesets (update)

Will updating to the latest version help?

Or are there any patches available?


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