Thanks for the reply John. The problem was indeed with the datatype. The
definition in datatypes_conf.xml was correct, but I was not importing it
into registry.py. Once I made that change the workflow editor started
On Sun, Nov 2, 2014 at 4:27 PM, John Chilton <jmchil...@gmail.com> wrote:
> Can you review this dev thread
> In particular can you go to the "View data types registry" option in
> the admin menu and see if Galaxy thinks it knows about this datatype?
> Let me know if Galaxy thinks the datatype exists.
> If the datatype doesn't exist - can you tell me how you have defined
> the custom dataytpe - directly in Galaxy, in a tool shed, etc...? The
> more details about the definition of the datatype you can provide the
> On Thu, Oct 30, 2014 at 4:52 PM, David Kelly <davidke...@uchicago.edu>
> > Hello,
> > I'm working with two custom tools in my local galaxy instance:
> > The first tool outputs a single aceb file. aceb is a custom datatype I've
> > added that describes a crop experiment.
> > The second tool takes three files as inputs, one of which is an aceb
> > I can successfully run these two tools together in Galaxy outside of a
> > workflow. But for some strange reason I cannot connect these two tools in
> > the workflow editor. The connection never turns green and links. Here are
> > the relevant lines in the tool wrappers:
> > Outputs of first tool:
> > <outputs>
> > <data format="aceb" name="acebData" label="Experiment data with
> > format" />
> > </outputs>
> > Inputs of second tool:
> > <inputs>
> > <param name="acebData" type="data" format="aceb" label="Inut Survey
> > Data" />
> > <param name="domeData" type="data" format="dome" label="Input Strategy
> > DOME Data" />
> > <param name="linkData" type="data" format="txt" label="Input Linkage
> > between field overlay and survey" />
> > </inputs>
> > Any ideas for what could be causing this? Thanks.
> > David
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