Well, here's one config that should work. I'll guess that you have the same
cleanup_datasets/ folder contents as I do so... having logged in as user that
galaxy runs under, doing a
crontab -e
on command line should get you crontab settings for that user. I have an older
longer line that handles daily cleanup...
0 0 * * * sh /[path to your
galaxy]/galaxy-dist/scripts/cleanup_datasets/delete_userless_histories.sh; sh
/usr/local/galaxy/production2/galaxy-dist/scripts/cleanup_datasets/purge_histories.sh;
sh
/usr/local/galaxy/production2/galaxy-dist/scripts/cleanup_datasets/purge_libraries.sh;
sh
/usr/local/galaxy/production2/galaxy-dist/scripts/cleanup_datasets/purge_folders.sh;
sh
/usr/local/galaxy/production2/galaxy-dist/scripts/cleanup_datasets/delete_datasets.sh;
sh
/usr/local/galaxy/production2/galaxy-dist/scripts/cleanup_datasets/purge_datasets.sh
or a more abbreviated version:
@daily cd /[path to another galaxy
instance]/galaxy-dist/scripts/cleanup_datasets && sh
delete_userless_histories.sh && sh purge_histories.sh && sh purge_libraries.sh
&& sh purge_folders.sh && sh delete_datasets.sh && sh purge_datasets.sh
Hopefully that works for you...
d.
------------------------------
Message: 4
Date: Wed, 19 Nov 2014 22:14:19 +0000
From: James Mullan <jamespamul...@gmail.com>
To: galaxy-...@bx.psu.edu
Subject: [galaxy-dev] How to get cleanup script to run in cron job ?
Message-ID:
<camk7q9cktop3qgcso_8smtudd3cbju-h0mnxdfzwpx0g2b4...@mail.gmail.com>
Content-Type: text/plain; charset="utf-8"
Hello,
I am trying to figure out how to run the cleanup scripts in a cron
job. The below works on command line:
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