On Thu, Dec 4, 2014 at 11:53 AM, David Matthews <pa...@bristol.ac.uk> wrote:
> HI, > > We have had a copy of Galaxy working on a login node on our cluster here > for a few weeks. We have tried to get it to work with the queue but could > not and so reverted back to the login node for now. However, when we try to > upload data (via URL or from the desktop) we now get this error: > > Traceback (most recent call last): > File "/isys/galaxy/galaxy-dist/tools/data_source/upload.py", line 10, in > <module> > import galaxy.model > File "/isys/galaxy/galaxy-dist/lib/galaxy/model/__init__.py", line 27, > in <module> > import galaxy.datatypes.registry > File "/isys/galaxy/galaxy-dist/lib/galaxy/datatypes/registry.py", line > 10, in <module> > import data > File "/isys/galaxy/galaxy-dist/lib/galaxy/datatypes/data.py", line 2, in > <module> > import metadata > File "/isys/galaxy/galaxy-dist/lib/galaxy/datatypes/metadata.py", line > 22, in <module> > from galaxy.util import listify > File "/isys/galaxy/galaxy-dist/lib/galaxy/util/__init__.py", line 38, in > <module> > eggs.require( 'docutils' ) > File "/isys/galaxy/galaxy-dist/lib/galaxy/eggs/__init__.py", line 411, > in require > return c[req.project_name].require() > File "/isys/galaxy/galaxy-dist/lib/galaxy/eggs/__init__.py", line 239, > in require > dists = self.resolve() > File "/isys/galaxy/galaxy-dist/lib/galaxy/eggs/__init__.py", line 192, > in resolve > if e.args[1].key != e.args[0].key: > IndexError: tuple index out of range > Hi David, I believe this is a dependency conflict. The best option would be to create a Python virtualenv and start Galaxy from that: https://wiki.galaxyproject.org/Admin/Config/Performance/ProductionServer#Use_a_clean_environment --nate > > We have not seen this before and are stuck. Any suggestions welcome! > > Best Wishes, > David. > > _________________________________ > Dr David A. Matthews > > Senior Lecturer in Virology > Room E49 > Department of Cellular and Molecular Medicine, > School of Medical Sciences > University Walk, > University of Bristol > Bristol. > BS8 1TD > U.K. > > Tel. +44 117 3312058 > Fax. +44 117 3312091 > > d.a.matth...@bristol.ac.uk > > > > > > > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > https://lists.galaxyproject.org/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ >
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