Hi Greg,
I would like to deploy my custom controller together with my tool via toolshed.
Is there already a way to do this? What should I add to my
tool_dependencies.xml?
I tried something like :
<action type="shell_command">
cd $GALAXY_HOME;
wget
http://toolshed.g2.bx.psu.edu/repos/pieterlukasse/nist_wrapper/raw-file/tip/nist_controller.py;
</action>
But I'm glad this apparently didn't work ;)
Thanks,
Pieter
From: galaxy-dev [mailto:[email protected]] On Behalf
Of Lukasse, Pieter
Sent: vrijdag 9 januari 2015 16:10
To: '[email protected]'
Subject: [galaxy-dev] FW: Adding a new web-service or perhaps a "webapp" to
Galaxy
Meanwhile I added a new file indeed to
<galaxy-dist>/lib/galaxy/webapps/galaxy/controllers/
and this works for me. If there is a better/easier/standard way of doing this,
please let me know!
Attached my file as example.
Best regards,
Pieter
From: galaxy-dev [mailto:[email protected]] On Behalf
Of Lukasse, Pieter
Sent: vrijdag 9 januari 2015 13:55
To: [email protected]<mailto:[email protected]>
Subject: Re: [galaxy-dev] Adding a new web-service or perhaps a "webapp" to
Galaxy
I could add a new file to
<galaxy-dist>/lib/galaxy/webapps/galaxy/controllers/
...is that a good way to do it?
From: galaxy-dev [mailto:[email protected]] On Behalf
Of Lukasse, Pieter
Sent: vrijdag 9 januari 2015 13:28
To: [email protected]<mailto:[email protected]>
Subject: [galaxy-dev] Adding a new web-service or perhaps a "webapp" to Galaxy
Hi,
In one of my tools I generate a HTML report which I would like to enhance with
some ajax functionality. I would like the possibility to do some backend
computations based on the ajax requests.
My question is: is there an easy way to add a new web-service to my Galaxy
server? The web-service implementation would be in python. Ideally I would like
to be able to ship this python file together with my tool via tool shed (and
when installing from toolshed, the necessary configurations are applied to the
server to enable this python code as a local web-service on the respective
Galaxy server).
Thanks!
Pieter Lukasse
Wageningen UR, Plant Research International
Department of Bioinformatics (Bioscience)
Wageningen Campus, Building 107, Droevendaalsesteeg 1, 6708 PB,
Wageningen, the Netherlands
T: +31-317481122;
M: +31-628189540;
skype: pieter.lukasse.wur
http://www.pri.wur.nl<http://www.pri.wur.nl/>
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