Hi Carl,
Sorry for answering so late: I was waiting to see if my solution was
satisfying. It seems to be ; therefore I don't need the patch (thanks
for you offer !).
To enable the phylogeny visualization (with Archaeopteryx), I added an
html output dataset with links to open each tree created by the tool
(through javascript). That works.
Nevertheless, I voted for the trello card, because basic workflow usage
and visualization would be useful in anonymous mode.
To answer your question: to my mind, reviewers want to stay anonymous
and don't want to create an account.
Thanks,
Loraine
Le 08/01/2015 16:50, Carl Eberhard a écrit :
Hi, Loraine
It isn't possible currently without modifying the code for your
installation.
If you'd like I can provide a patch file that can be applied which
will allow the visualization button (and the link to phyloviz) to be
displayed for an anonymous user. This may, however, make it difficult
to update at a later date and cause problems if the user tries to save
or do user-related functions in the visualization. Let me know if
you'd like that patch.
I don't have a good answer for your anonymous reviewer problem. If I
understand correctly, allowing them to be anonymous would be much
easier for them than logging in?
In the long run we may be able to make a version of workflows and
visualizations that can be used by anonymous users (they likely
wouldn't be fully-featured). This is currently on our list here:
https://trello.com/c/gja5TtwF. Please feel free to add thoughts,
suggestions, and your vote for priority.
Thanks for the information,
Carl
On Tue, Jan 6, 2015 at 4:25 AM, Loraine Guéguen
<loraine.gueg...@sb-roscoff.fr <mailto:loraine.gueg...@sb-roscoff.fr>>
wrote:
Hi Carl,
Thanks for your answer.
I need a tool to visualize a phyloxml file (like phyloviz). No
need for saving or publishing, only to open the phyloxml file with
a visualisator through Galaxy. It is not possible ?
Visualization, and also workflow, in anonymous mode would be
useful to us in other cases in the future, typically for the
reviewers to be able to test submitted tools or pipelines.
Loraine
Le 05/01/2015 15:54, Carl Eberhard a écrit :
Hi, Loraine
At this time there is no way to activate visualizations for
anonymous users. The logged-in user data is required by most
visualizations for some features to work (e.g. saving
visualizations, publishing, etc.).
In the future, it might be possible to de-couple these systems
and provide what your looking for on a case-by-case basis. Which
visualization would you want to be available? Trackster, Charts,
or a local/custom visualization?
On Mon, Dec 22, 2014 at 10:00 AM, Loraine Guéguen
<loraine.gueg...@sb-roscoff.fr
<mailto:loraine.gueg...@sb-roscoff.fr>> wrote:
Hi,
I'd like to use the visualization in anonymous mode, but the
visualize icon on the dataset is not available in anonymous
mode (although it works fine when connected).
Is it possible to activate the dataset visualization in
anonymous mode ?
Thanks,
Loraine
--
Loraine Guéguen
Plateforme ABiMS (Analyses and Bioinformatics for Marine
Sciences)
Service Informatique et Bioinformatique
Station Biologique de Roscoff
FR 2424 CNRS UPMC
Place Georges Teissier
CS 90074
29688 Roscoff cedex
tel: ++33 (0)2 98 29 56 46
<tel:%2B%2B33%20%280%292%2098%2029%2056%2046> (interne : 415)
http://abims.sb-roscoff.fr/
http://www.sb-roscoff.fr/
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--
Loraine Guéguen
Plateforme ABiMS (Analyses and Bioinformatics for Marine Sciences)
Service Informatique et Bioinformatique
Station Biologique de Roscoff
FR 2424 CNRS UPMC
Place Georges Teissier
CS 90074
29688 Roscoff cedex
tel:++33 (0)2 98 29 56 46 <tel:%2B%2B33%20%280%292%2098%2029%2056%2046>
(interne : 415)
http://abims.sb-roscoff.fr/
http://www.sb-roscoff.fr/
--
Loraine Guéguen
Plateforme ABiMS (Analyses and Bioinformatics for Marine Sciences)
Service Informatique et Bioinformatique
Station Biologique de Roscoff
FR 2424 CNRS UPMC
Place Georges Teissier
CS 90074
29688 Roscoff cedex
tel: ++33 (0)2 98 29 56 46 (interne : 415)
http://abims.sb-roscoff.fr/
http://www.sb-roscoff.fr/
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
https://lists.galaxyproject.org/
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