Yeah - I am not very familiar with data source tools at all - sorry.
Are you creating a galaxy.json file in upload3.py? If you are creating
that file but cannot distinguish between the files - I would try
adding "name" or "designation" fields to the JSON lines in that file -
I would think one of those should work.

-John

On Wed, Apr 1, 2015 at 9:07 AM, Daniele P Colobraro
<d.colobr...@gmail.com> wrote:
> Thanks John for your help,
> if I get it will I set just a external view of my files?
> My idea is to provide multiple files in the galaxy history.
> I tried to rewrite the 'galaxy.joson' file but without results.
> So far, I have made up just the tool below:
>
>  upload3.py $report1 $report1.id $__new_file_path__
> #if (len(str($url_paste).split(','))>1):
>         #for $i in $url_paste:
>                 $i
>         #end for
> #else:
>         $url_paste
> #end if
> </command>
>  <inputs action="link to" check_values="false" method="post">
>        </inputs>
> <request_param_translation>
> <request_param galaxy_name="URL_method" remote_name="URL_method"
> missing="post" />
> <request_param galaxy_name="URL" remote_name="URL" missing="" />
> <request_param galaxy_name="url_paste" remote_name="mclfile[]" missing="txt"
> />
> </request_param_translation>
>  <outputs>
>                 <data format="txt" name="report1" />
> </outputs>
>
> Using this config file I'm able to import multiple files in the galaxy
> history.
> But I can't set a name to distinguish them.
> I am not sure how to proceed.
>
> If you or anyone have other suggestions I will be grateful.
>
> thanks again
> Daniele
>
>
> 2015-03-30 2:57 GMT+02:00 John Chilton <jmchil...@gmail.com>:
>>
>> There was some work last summer to allow something that at least
>> vaguely sounds like what you are trying to accomplish - though I was
>> not involved so I probably am unable to help out much. The Trello card
>> that was tracking progress on this can be found here -
>> https://trello.com/c/YlADVbkI - and seems to provide some good
>> details. I am not sure if there is more formal documentation anywhere
>> though.
>>
>> Hope this helps,
>>
>> -John
>>
>> On Fri, Mar 27, 2015 at 7:34 AM, Daniele P Colobraro
>> <d.colobr...@gmail.com> wrote:
>> > Hi all,
>> >
>> > I've set up a simple tool using the synchronous method to upload a file
>> > on
>> > galaxy.
>> > I'm able to visit the external link, select and upload a file by the
>> > list.
>> > The script that I use is data_source.py and the 'command' part in the
>> > xml
>> > configuration is the same as the ucsc xml config
>> > (ucsc_tablebrowser.xml).
>> > But my purpose is to import multiple files.
>> >
>> > Have you any idea how I can set a way to import/upload multiple files by
>> > using the synchronous method?
>> >
>> > Thank in advance,
>> > Best regards
>> > Daniele
>> >
>> >
>> > ___________________________________________________________
>> > Please keep all replies on the list by using "reply all"
>> > in your mail client.  To manage your subscriptions to this
>> > and other Galaxy lists, please use the interface at:
>> >   https://lists.galaxyproject.org/
>> >
>> > To search Galaxy mailing lists use the unified search at:
>> >   http://galaxyproject.org/search/mailinglists/
>
>
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/

Reply via email to