Thanks, Dan; the Tool Shed accepted the repo as a valid utility now (big oops
on my part). I had to make a few other corrections to the wrapper script as
well, so we’ll see how the automated tool testing goes… Do you know how often
testing is conducted on the site?
On Apr 21, 2015, at 2:46 PM, Daniel Blankenberg <d...@bx.psu.edu> wrote:
> Hi CS,
> I assume you have the rest of the <tool> tags, but didn’t paste it here.
> One thing is that you need to close your test and tests elements properly:
> You may want to pass your config through a simple xml validator to try to
> shake any other issues out as well.
> Thanks for using Galaxy,
> On Apr 21, 2015, at 3:40 PM, Christy Shafer <csha...@morgridge.org> wrote:
>> I'm trying to format a test tag in a tool config for the public Tool Shed
>> that includes a repeated input parameter. I followed the syntax suggested in
>> the following archived galaxy-dev post (was unable to find much other
>> guidance): http://git.net/galaxy-development-source-control/msg15241.html,
>> but the config file must be invalid because my repository on the Tool Shed
>> does not register as an installable Galaxy utility. Any guidance is much
>> appreciated.. Below are the relevant config code sections:
>> <repeat name="Files" title="Join file">
>> <param name="joinMe" type="data" checked="yes" format="tabular"
>> label="Join" />
>> <param name="joinCol" label="using column" type="data_column"
>> data_ref="joinMe" />
>> <param name="headerYes" type="select" label="Treat first line as
>> <option value="yes" selected="true">Yes</option>
>> <option value="no">No</option>
>> <data format="tabular" name="Joined_all" label="Multi-Join result"/>
>> <param name="Files_0|joinMe" value="multi_join_serial_in1.tab"
>> <param name="Files_0|joinCol" value="1"/>
>> <param name="Files_1|joinMe" value="multi_join_serial_in2.tab"
>> <param name="Files_1|joinCol" value="1"/>
>> <param name="Files_2|joinMe" value="multi_join_serial_in3.tab"
>> <param name="Files_2joinCol" value="2"/>
>> <param name="headerYes" value="yes"/>
>> <output name="Joined_all" value="multi_join_serial_out.tab"
>> Thanks for your help,
>> Please keep all replies on the list by using "reply all"
>> in your mail client. To manage your subscriptions to this
>> and other Galaxy lists, please use the interface at:
>> To search Galaxy mailing lists use the unified search at:
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
To search Galaxy mailing lists use the unified search at: