Christy,

You may be interested in using planemo for local testing of tools, rather
than waiting for the automated tool shed testing.

http://planemo.readthedocs.org/en/latest/
http://planemo.readthedocs.org/en/latest/commands.html#test-command

Cheers,
Eric


2015-04-21 15:25 GMT-05:00 Christy Shafer <csha...@morgridge.org>:

> Thanks, Dan; the Tool Shed accepted the repo as a valid utility now (big
> oops on my part). I had to make a few other corrections to the wrapper
> script as well, so we’ll see how the automated tool testing goes… Do you
> know how often testing is conducted on the site?
>
> Thanks again,
> C
>
> On Apr 21, 2015, at 2:46 PM, Daniel Blankenberg <d...@bx.psu.edu> wrote:
>
> > Hi CS,
> >
> > I assume you have the rest of the <tool> tags, but didn’t paste it here.
> >
> > One thing is that you need to close your test and tests elements
> properly:
> >>    <test/>
> >> <tests/>
> >
> >    </test>
> > </tests>
> >
> > You may want to pass your config through a simple xml validator to try
> to shake any other issues out as well.
> >
> >
> >
> > Thanks for using Galaxy,
> >
> > Dan
> >
> >
> > On Apr 21, 2015, at 3:40 PM, Christy Shafer <csha...@morgridge.org>
> wrote:
> >
> >> Hello,
> >>
> >> I'm trying to format a test tag in a tool config for the public Tool
> Shed that includes a repeated input parameter. I followed the syntax
> suggested in the following archived galaxy-dev post (was unable to find
> much other guidance):
> http://git.net/galaxy-development-source-control/msg15241.html, but the
> config file must be invalid because my repository on the Tool Shed does not
> register as an installable Galaxy utility. Any guidance is much
> appreciated.. Below are the relevant config code sections:
> >>
> >> <inputs>
> >>      <repeat name="Files" title="Join file">
> >>              <param name="joinMe" type="data" checked="yes"
> format="tabular" label="Join" />
> >>              <param name="joinCol" label="using column"
> type="data_column" data_ref="joinMe" />
> >>      </repeat>
> >>       <param name="headerYes" type="select" label="Treat first line as
> header?">
> >>               <option value="yes" selected="true">Yes</option>
> >>               <option value="no">No</option>
> >>       </param>
> >> </inputs>
> >> <outputs>
> >>      <data format="tabular" name="Joined_all" label="Multi-Join
> result"/>
> >> </outputs>
> >> <tests>
> >>    <test>
> >>      <param name="Files_0|joinMe" value="multi_join_serial_in1.tab"
> ftype="tabular"/>
> >>      <param name="Files_0|joinCol" value="1"/>
> >>      <param name="Files_1|joinMe" value="multi_join_serial_in2.tab"
> ftype="tabular"/>
> >>      <param name="Files_1|joinCol" value="1"/>
> >>      <param name="Files_2|joinMe" value="multi_join_serial_in3.tab"
> ftype="tabular"/>
> >>      <param name="Files_2joinCol" value="2"/>
> >>      <param name="headerYes" value="yes"/>
> >>      <output name="Joined_all" value="multi_join_serial_out.tab"
> ftype="tabular"/>
> >>    <test/>
> >> <tests/>
> >>
> >> Thanks for your help,
> >> CS
> >> ___________________________________________________________
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> >>
> >
>
> ___________________________________________________________
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>



-- 
Eric Rasche
Programmer II

Center for Phage Technology
Rm 312A, BioBio
Texas A&M University
College Station, TX 77843
404-692-2048
e...@tamu.edu
rasche.e...@yandex.ru
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