I am designing some test and I have a problem, it works under the Galaxy
web environment, but it doesn't work when I try to use it as a test case.
Indeed I am trying other tests and they fail as well.

My test  *./run_tests.sh -framework -id parallelism_bam_filter_reads* says
the next:

ERROR: filter reads ( parallelism_bam_filter_reads ) > Test-1
Traceback (most recent call last):
  File "/home/ralonso/galaxy/test/functional/test_toolbox.py", line 268, in
    self.do_it( td )
  File "/home/ralonso/galaxy/test/functional/test_toolbox.py", line 55, in
    raise e
RunToolException: Error creating a job for these tool inputs - {u'type':
u'error', u'data': {u'input': u'History does not include a dataset of the
required format / build'}}

And the other test  *./run_tests.sh -framework -id compare_bam_as_sam*

ERROR: compare_bam_as_sam ( compare_bam_as_sam ) > Test-1
Traceback (most recent call last):
  File "/home/ralonso/galaxy/test/functional/test_toolbox.py", line 268, in
    self.do_it( td )
  File "/home/ralonso/galaxy/test/functional/test_toolbox.py", line 37, in
    stage_data_in_history( galaxy_interactor, testdef.test_data(),
test_history, shed_tool_id )
  File "/home/ralonso/galaxy/test/base/interactor.py", line 38, in
  File "/home/ralonso/galaxy/test/base/interactor.py", line 279, in wait
    while not self.__history_ready( history_id ):
  File "/home/ralonso/galaxy/test/base/interactor.py", line 297, in
    return self._state_ready( state, error_msg="History in error state." )
  File "/home/ralonso/galaxy/test/base/interactor.py", line 356, in
    raise Exception( error_msg )
Exception: History in error state.
-------------------- >> begin captured logging << --------------------

Besides than it tries to migrate the database each time I try a test case
and it takes too long. I have seen that you can use --db postgres but it
doesn't work, I think this option should be user with --dockerize (that is
not my case).

would you have any idea of what is going on?

Best regards

Roberto Alonso
Functional Genomics Unit
Bioinformatics and Genomics Department
Prince Felipe Research Center (CIPF)
C./Eduardo Primo Yúfera (Científic), nº 3
(junto Oceanografico)
46012 Valencia, Spain
Tel: +34 963289680 Ext. 1021
Fax: +34 963289574
E-Mail: ralo...@cipf.es
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