Hi Folks,
I'm working on setting up a Galaxy production server, following the
instructions on
https://wiki.galaxyproject.org/Admin/Config/Performance/ProductionServer.
I'm using postgresql and an Apache proxy server. It's not going well, and
I could use some guidance.
When I access the galaxy server on Google Chrome, I can't log in. I can go
to the login prompt and enter my credentials, but after I do that, I
continue to see the login prompt as if I hadn't logged in.
Then when I try to do a simple file upload, I see this message in pink in
the history panel:
"An error occurred while getting updates from the server. Please contact a
Galaxy admninistrator if the problem persists"
and when I click on the little bug icon, here's what I see in the Galaxy
pane:
{
"agent": "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_10_3)
AppleWebKit/537.36 (KHTML, like Gecko) Chrome/42.0.2311.90 Safari/537.36",
"url": "
https://galaxyxena.soe.ucsc.edu/galaxy/galaxy/api/histories/bf0806da5b28c6d9/contents
",
"data": "",
"options": {
"data": {},
"parse": true,
"emulateHTTP": false,
"emulateJSON": false
},
"xhr": {
"readyState": 4,
"responseText": "{\"err_msg\": \"History is not accessible by user\",
\"err_code\": 403002}",
"responseJSON": {
"err_msg": "History is not accessible by user",
"err_code": 403002
},
"status": 403,
"statusText": "Forbidden",
"responseHeaders": {
"Date": "Wed, 13 May 2015 02:23:16 GMT\r",
"cache-control": "max-age=0,no-cache,no-store\r",
"Transfer-Encoding": "chunked\r",
"Server": "PasteWSGIServer/0.5 Python/2.7.1\r",
"Connection": "close\r",
"x-frame-options": "SAMEORIGIN\r",
"content-type": "application/json\r"
}
},
"source": [],
"user": {
"quota_percent": null,
"nice_total_disk_usage": "0 bytes",
"total_disk_usage": 0,
"id": null,
"username": "(anonymous user)",
"email": "",
"is_admin": false
}
}
Meanwhile, paster.log shows the following error messages:
galaxy.tools ERROR 2015-05-12 19:23:16,766 Exception caught while
attempting to\
ol execution:
Traceback (most recent call last):
File "/scratch/home/galaxy/galaxy/lib/galaxy/tools/__init__.py", line
1303, in handle_single_execution
job, out_data = self.execute( trans, incoming=params, history=history,
rerun_remap_job_id=rerun_remap_job_id,mapping_over_collection=mapping_over_collection
)
File "/scratch/home/galaxy/galaxy/lib/galaxy/tools/__init__.py", line
1867, in execute
return self.tool_action.execute( self, trans, incoming=incoming,
set_output_hid=set_output_hid, history=history, **kwargs )
File "/scratch/home/galaxy/galaxy/lib/galaxy/tools/actions/upload.py",
line 21, in execute
uploaded_datasets = upload_common.get_uploaded_datasets( trans, '',
incoming, precreated_datasets, dataset_upload_inputs, history=history )
File
"/scratch/home/galaxy/galaxy/lib/galaxy/tools/actions/upload_common.py", line
242, in get_uploaded_datasets
data = new_upload( trans, cntrller, uploaded_dataset,
library_bunch=library_bunch, history=history )
File
"/scratch/home/galaxy/galaxy/lib/galaxy/tools/actions/upload_common.py", line
232, in new_upload
return __new_history_upload( trans, uploaded_dataset, history=history,
state=state )
File
"/scratch/home/galaxy/galaxy/lib/galaxy/tools/actions/upload_common.py",line
135, in __new_history_upload
hda.state = hda.states.QUEUED
File "/scratch/home/galaxy/galaxy/lib/galaxy/model/__init__.py", line
1546, in set_dataset_state
object_session( self ).add( self.dataset )
AttributeError: 'NoneType' object has no attribute 'add'
Meanwhile, if I'm working on Firefox, I can log in and upload files with no
trouble.
Any ideas?
Thanks!
Melissa
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