Yeah - moving to git is great if it is an option. For the record though - bitbucket will be updated eventually to include this fix - but it does lag behind github some.
-John On Wed, Jun 17, 2015 at 10:06 AM, Bjoern Gruening <bjoern.gruen...@gmail.com> wrote: > Hi Peter, > > it seems that bugfixes are not backported to bitbucket. > We had the same trouble here and I migrated to git real quick. > > It is pretty easy. Check out 15.05 in bitbucket and clone one github repo > with the same branch. > Now you can swap the .hg and .git folders. Make a backup of everything > before :) > > And do not forget to copy the .gitignore over :) > Hope this hleps! > Bjoern > > >> Hello Dannon >> >> Thanks for the quick response - glad to hear it's already been >> detected and fixed. >> >> Just to confirm though - am I right in thinking that the fix hasn't >> propagated through to bitbucket/galaxy-dist yet? Our production >> instance is still based off this and the change didn't seem to come >> up when I did "hg update" to the tip. >> >> Should we be considering migrating our deployment to github at some >> point? >> >> Thanks again, best wishes >> >> Peter >> >> On 17/06/15 14:12, Dannon Baker wrote: >>> Hey Peter, this was indeed reported and fixed in >>> >>> https://github.com/galaxyproject/galaxy/commit/7294bd0af33bc974684c8ed8d21e97017660ca22, >>> >>> > which should already be available in the release_15.05 branch of the >>> repository if you update. >>> >>> Sorry for the trouble, and even though it's resolved now, thanks >>> for taking the time to debug this and write such a detailed error >>> report including a patch! >>> >>> >>> -Dannon >>> >>> On Wed, Jun 17, 2015 at 9:03 AM Peter Briggs >>> <peter.bri...@manchester.ac.uk >>> <mailto:peter.bri...@manchester.ac.uk>> wrote: >>> >>> Hello >>> >>> I think a bug was introduced into galaxy-dist between the 15.03 >>> and 15.05 releases, for the "Share history with user" function. The >>> function works for 15.03 but fails in 15.05. >>> >>> To reproduce: 1. Click on the "cog" icon for a history and select >>> "Share or publish" 2. Under "Share History with Individual Users" >>> click "Share with a user" 3. Enter the email of another user on the >>> system and click submit >>> >>> In 15.03 this returns to the sharing screen and indicates that the >>> history has been shared with the specified user; in 15.05 this >>> produces a stack trace (or "internal server error" in a production >>> setting"). >>> >>> The following patch appears to fix the problem: >>> >>> diff -r c3cef260df88 >>> lib/galaxy/webapps/galaxy/controllers/history.py --- >>> a/lib/galaxy/webapps/galaxy/controllers/history.py Fri May 15 >>> 15:20:17 2015 -0400 +++ >>> b/lib/galaxy/webapps/galaxy/controllers/history.py Wed Jun 17 >>> 12:51:41 2015 +0100 @@ -899,7 +899,7 @@ for history_id in ids: >>> history_id = self.decode_id( history_id ) history = >>> self.history_manager.get_owned( history_id, trans.user, >>> current_history=trans.history ) - histories.append( ) + >>> histories.append( history ) return histories >>> >>> def _get_users( self, trans, user, emails_or_ids ): >>> >>> also available via this gist: >>> >>> https://gist.github.com/pjbriggs/65c29a87e094d4d257f6 >>> >>> Apologies if this has already been reported/fixed elsewhere, or if >>> there's a better way to submit this fix (if so then please let me >>> know) >>> >>> Best wishes >>> >>> Peter >>> >>> -- Peter Briggs peter.bri...@manchester.ac.uk >>> <mailto:peter.bri...@manchester.ac.uk> Bioinformatics Core Facility >>> University of Manchester B.1083 Michael Smith Bldg Tel: (0161) >>> 2751482 >>> ___________________________________________________________ Please >>> keep all replies on the list by using "reply all" in your mail >>> client. To manage your subscriptions to this and other Galaxy >>> lists, please use the interface at: >>> https://lists.galaxyproject.org/ >>> >>> To search Galaxy mailing lists use the unified search at: >>> http://galaxyproject.org/search/mailinglists/ >>> >> > > > > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > https://lists.galaxyproject.org/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
